Locus 4332

Sequence ID 2R_DroMel_CAF1
Location 14,235,591 – 14,235,689
Length 98
Max. P 0.521108
window6945

overview

Window 5

Location 14,235,591 – 14,235,689
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 92.14
Mean single sequence MFE -20.34
Consensus MFE -15.34
Energy contribution -15.94
Covariance contribution 0.60
Combinations/Pair 1.14
Mean z-score -1.62
Structure conservation index 0.75
SVM decision value -0.02
SVM RNA-class probability 0.521108
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14235591 98 - 20766785
UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA
..((((((((.....(((((...........(((......)))..........(....)..)))))...((((.....))))))))).)))....... ( -22.80)
>DroSec_CAF1 14900 98 - 1
UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA
..((((((((.....(((((...........(((......)))..........(....)..)))))...((((.....))))))))).)))....... ( -22.80)
>DroSim_CAF1 19934 98 - 1
UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA
..((((((((.....(((((...........(((......)))..........(....)..)))))...((((.....))))))))).)))....... ( -22.80)
>DroEre_CAF1 15367 93 - 1
UCGCUC---UAAUUAGGCAAAACAAAGAGUAGUA-GCAAAGACGAAAAUGAAGCGAAAGGAU-GCCAGCGAAUGCAUAAGUCAGCUGAAGCGAAUGAA
(((((.---......((((.........((....-))................(....)..)-)))(((..((......))..)))..)))))..... ( -15.20)
>DroYak_CAF1 14986 98 - 1
UCGCUCGGCUAAUUAGGCAAAACAAAGAGUAGUAAGCAAAGAAGAAAAGGCAGCGAAAGGAUUGCAAGUGAAUGCAAAAGUCAGUUGAAGCGUUUGAA
.(((((((((......((...((........))..))...........(((..(....)..(((((......)))))..)))))))).))))...... ( -18.10)
>consensus
UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA
..((((((((.(((.(((((........((.....))................(....)..))))).((....))...))).))))).)))....... (-15.34 = -15.94 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:14 2006