Locus 4331

Sequence ID 2R_DroMel_CAF1
Location 14,234,589 – 14,234,682
Length 93
Max. P 0.871789
window6944

overview

Window 4

Location 14,234,589 – 14,234,682
Length 93
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.51
Mean single sequence MFE -28.75
Consensus MFE -19.35
Energy contribution -18.93
Covariance contribution -0.42
Combinations/Pair 1.15
Mean z-score -1.53
Structure conservation index 0.67
SVM decision value 0.87
SVM RNA-class probability 0.871789
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14234589 93 + 20766785
GC---GCUGCCUUUGCUUGUGUGCUCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GCUG-------GAGCAGAG------
((---.(((((.(((.((((((((.......((.(((((((((............))))))))).))..))))))))))).)))-...)-------).))....------ ( -30.60)
>DroVir_CAF1 14550 91 + 1
-------CGCUUCUAUCUGUGUGCUGCUGAUGUGGGUCAUAAAUGUAACUCCAUUUUUAUGACCAACUUGCACACAACGC--GCAGUCC-------G-UAAGAG--UAAA
-------.(((..((((((((((.((.((.(((.(((((((((.((......)).))))))))).....))))))).)))--))))...-------)-))..))--)... ( -26.00)
>DroSim_CAF1 18916 100 + 1
GCAAAGCUGCCUUUGCUUGUGUGUGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GCUG-------AAGCAG--AGCAGC
.....(((((.(((((((..((((((.....((.(((((((((............))))))))).))..))))))(.((....)-))..-------))))))--)))))) ( -34.90)
>DroEre_CAF1 14358 94 + 1
------CUGCCUUUGCUUGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GAUG-------AAGCAGAG--CAGA
------((((.((((((((((((((......((.(((((((((............))))))))).)).)))))))..((....)-)...-------))))))))--))). ( -32.60)
>DroYak_CAF1 13972 83 + 1
-----------------UGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GCUG-------AAGCAGAG--CAGA
-----------------.(((((((......((.(((((((((............))))))))).)).))))))).......((-.(((-------...))).)--)... ( -23.20)
>DroAna_CAF1 22535 87 + 1
-----------------UGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GUUUGGCGUUCGGUCAGAG--C---
-----------------.(((((((......((.(((((((((............))))))))).)).))))))).......((-.((((((.....)))))))--)--- ( -25.20)
>consensus
_______UGCCUUUGCUUGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC_GCUG_______AAGCAGAG__CAGA
.................(((((((.......((.(((((((((.((......)).))))))))).))..))))))).................................. (-19.35 = -18.93 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:13 2006