| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,207,622 – 14,207,736 |
| Length | 114 |
| Max. P | 0.774276 |
| Location | 14,207,622 – 14,207,736 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.68 |
| Mean single sequence MFE | -37.18 |
| Consensus MFE | -23.86 |
| Energy contribution | -23.92 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14207622 114 + 20766785 GGACAAGCUCCUCCGGGUCGGCUACUAUGAGCUGGAGAAGACCAUCGGCAAGGGCAACUUUGCAGUGGUCAAGCUGGCUACCAACAUUGUGACCAAGACAAAGGUGAGUUUCCA--- (((..(((((..((..(((((.(((.((((((..(....((((((..((((((....)))))).))))))...)..))).....))).))).))..)))...)).)))))))).--- ( -43.50) >DroVir_CAF1 34110 111 + 1 GGACAAGCUCCUGCGCGUCGGCUACUACGAGCUGGAGAAGACAAUUGGCAAGGGCAACUUUGCCGUGGUCAAACUAGCCACAAAUAUUGUAACCAAGACCAAGGUGAGUAA------ ((.....((((.((.(((.(....).))).)).))))...(((((.(((((((....)))))))(((((.......)))))....)))))..))...((....))......------ ( -36.50) >DroGri_CAF1 31996 111 + 1 UGACAAACUGCUCCGCGUCGGUUACUACGAGCUGGAGAAGACAAUUGGCAAGGGCAACUUUGCCGUCGUCAAGCUGGCCACGAACGUUGUGACCAGAACAAAGGUGAGUUG------ .(((..(((.((((((.(((.......))))).))))..(((...((((((((....))))))))..)))...((((.(((((...))))).))))......)))..))).------ ( -39.90) >DroEre_CAF1 25558 110 + 1 GGACAAGCUGCUCCGAGUCGGCUACUAUGAGCUGGAGAAGACCAUCGGCAAGGGCAACUUUGCCGUGGUCAAGCUGGCCACCAACAUUGUGACCAAGACGAAGGUGA-------GCA .....((((.(((((..(((.......)))..)))))..(((((.((((((((....))))))))))))).)))).((((((....((((.......)))).)))).-------)). ( -43.70) >DroWil_CAF1 43188 113 + 1 GGAUAAACUCCUUCGCGUUGGCUACUAUGAACUGGAAAAGACCAUCGGCAAGGGCAAUUUCGCCGUUGUCAAGUUGGCCACAAAUAUUGUCACUAAAACAAAGGUGAGUUUA-A--- ...((((((((((...((.(((((((..((..(((......)))))(((((.(((......))).))))).)).))))))).....((((.......))))))).)))))))-.--- ( -30.90) >DroMoj_CAF1 36088 111 + 1 GGAUAAACUUUUACGUGUCGGCUACUACGAACUGGAGAAAACGAUCGGAAAGGGAAACUUUGCCGUAGUUAAACUGGCCACAAACAUUGUGACCAAGACAAAGGUGAGUUA------ .....(((((.....((((((((((.........((........))((.((((....)))).))))))))....(((.((((.....)))).))).)))).....))))).------ ( -28.60) >consensus GGACAAACUCCUCCGCGUCGGCUACUACGAGCUGGAGAAGACCAUCGGCAAGGGCAACUUUGCCGUGGUCAAGCUGGCCACAAACAUUGUGACCAAGACAAAGGUGAGUUA______ .....(((((......((.((((((((.....)))....(((...((((((((....))))))))..)))....)))))))..........(((........))))))))....... (-23.86 = -23.92 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:03 2006