| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,204,786 – 14,204,878 |
| Length | 92 |
| Max. P | 0.711716 |
| Location | 14,204,786 – 14,204,878 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 85.45 |
| Mean single sequence MFE | -15.88 |
| Consensus MFE | -11.95 |
| Energy contribution | -11.95 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14204786 92 + 20766785 AUAGUGCCUUCUCCCUCUUAGCUUUGUCAGUCGAUGGAGAACCCACGAUUGUCUCUCUUCUCGCAUAUUUGCUUUGCUCCGUCGCCCUAUCC ((((.((..................(.((((((.(((.....))))))))).).........(((....)))...........)).)))).. ( -16.50) >DroSec_CAF1 22059 76 + 1 AUAGUGCCUUCUCCUUCUU----------------GGAGAACCCACGAUUGUCUCUCUUCUCGCAUAUUUGCUUUGCUCCGUCGCCCUAUCC ...(((..((((((.....----------------))))))..)))................(((....)))...((......))....... ( -14.80) >DroSim_CAF1 22420 76 + 1 AUAGUGCCUUCUCCCUCUU----------------GGAGAACCCACGAUUGUCUCUCUUCUCGCAUAUUUGCUUUGCUCCGUCGCCCUAUCC ...(((..((((((.....----------------))))))..)))................(((....)))...((......))....... ( -13.60) >DroYak_CAF1 23678 92 + 1 AUAGUGCCUUCUCCCUCUUGGCUUUGUCAGUGGAUGGAGAACCCACGAUUGUCUCUUCUCUCGCAUAUUUGCUUUGCUCCAUCGCCCUAUCC ((((.((..........(((((...)))))..(((((((.......((..(......)..))(((....)))....))))))))).)))).. ( -18.60) >consensus AUAGUGCCUUCUCCCUCUU________________GGAGAACCCACGAUUGUCUCUCUUCUCGCAUAUUUGCUUUGCUCCGUCGCCCUAUCC ...(((..((((((.....................))))))..)))................(((....)))...((......))....... (-11.95 = -11.95 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:02 2006