| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,204,362 – 14,204,473 |
| Length | 111 |
| Max. P | 0.539893 |
| Location | 14,204,362 – 14,204,473 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 72.00 |
| Mean single sequence MFE | -18.79 |
| Consensus MFE | -9.18 |
| Energy contribution | -9.53 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14204362 111 - 20766785 CGCAGUGACAUAUUUGCUUUAGAGAUAAAAAAAAUCUCAAAACUCAUUUAAAAUUCAAAACAUAAUGAGAACGUACUCUUUGCUUCUCAGUAGUAA-UUUU-------AAAAAAACAGU .((((........))))....(((((.......)))))........(((((((((....((.((.((((((.(((.....))))))))).))))))-))))-------)))........ ( -17.80) >DroSec_CAF1 21640 112 - 1 CGAAGUGGCAUAUUUGCUUAAGAGAUUAAAAAAAUCUCAAAACUCGUUUAAAAUUCAAAACAUAAUGAGAACGUACUCUUUGCUUCAUUAUAGUAAAUAUC-------AAAAAACCAGU .(((((((((....))))...((((((.....))))))....((((((...............))))))............)))))...............-------........... ( -17.56) >DroYak_CAF1 23225 110 - 1 CAACGCGCCUUAU--------GACCUAGAAAAUAUCUCUAAAUUCAUUUACAAAAUAAAGCAUAAUGAGAACGUACUCAUUGCUUUUUAAUGG-AAAUAACAUUAGGCAAAAAAACUGU ......((((.((--------(...((((.......))))..((((((........((((((..(((((......)))))))))))..)))))-).....))).))))........... ( -21.00) >consensus CGAAGUGACAUAUUUGCUU_AGAGAUAAAAAAAAUCUCAAAACUCAUUUAAAAUUCAAAACAUAAUGAGAACGUACUCUUUGCUUCUUAAUAGUAAAUAUC_______AAAAAAACAGU .(((((...............((((((.....))))))....((((((...............))))))............)))))................................. ( -9.18 = -9.53 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:01 2006