Locus 4321

Sequence ID 2R_DroMel_CAF1
Location 14,198,725 – 14,198,831
Length 106
Max. P 0.554343
window6930

overview

Window 0

Location 14,198,725 – 14,198,831
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 80.85
Mean single sequence MFE -30.22
Consensus MFE -20.32
Energy contribution -22.64
Covariance contribution 2.32
Combinations/Pair 1.33
Mean z-score -1.60
Structure conservation index 0.67
SVM decision value 0.04
SVM RNA-class probability 0.554343
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14198725 106 - 20766785
CUGAAAUAUCAAUGGAUCUAGGGCAGAGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUCUUGGAUCCCAUUUUGUCGGUCUGACGCUGAAUCCGGAAAGGAG
.............(((((((((((...((((.((((.(.......).)))).))))....))))))))))).......(((((.....))))).(((.....))). ( -31.20)
>DroSec_CAF1 15983 106 - 1
AUGAAAUAUCCAUGGAUCUACGCCAAGGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUUUCGGUUCCCAUUUUGUCGGUAUAACACUGAUUCCGGAAAGGAG
........(((..(((((...(((...((((.((((.(.......).)))).))))...)))...)))))((.....((((((.....))))))...))...))). ( -24.60)
>DroSim_CAF1 16384 106 - 1
AUGAAAUAUCCAUGGAUCUAGGGCAAGGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUUUCGGAUCCCAUUUUGUCGGUAUAACACUGAUUCCGGAAAGGAG
........(((..((((((..(((...((((.((((.(.......).)))).))))....)))..))))))......((((((.....))))))...)))...... ( -29.00)
>DroEre_CAF1 16307 94 - 1
AUGAAAUACCCAGGGAUCUG------------GAGCUCAAGGAAAGCGCAUCCUUCGCAGGCUUCGGAUCCCAUUUUGUCGGUCUAACCCUUCAUUCGGAGCGGAG
............((((((((------------(((((.(((((.......)))))....)))))))))))))...............((((((....)))).)).. ( -31.90)
>DroYak_CAF1 17390 106 - 1
AUGAAAUAUCCAAGGAUCCAAAACAAGGAACAAAGCUCAAGGAAAGUGCUUCGUUCGCAGGUUUUGGAUCCCAUUUCGUGGGUAUAACGCUUCAUUCGGAGAGGAG
.....(((((((.(((((((((((..(((((.((((.(.......).)))).)))).)..))))))))))).......)))))))..(.((((....)))).)... ( -34.40)
>consensus
AUGAAAUAUCCAUGGAUCUAGGGCAAGGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUUUCGGAUCCCAUUUUGUCGGUAUAACACUGAAUCCGGAAAGGAG
........(((..(((((((((((...((((.((((.(.......).)))).))))....)))))))))))..((((((((((.....)))))...))))).))). (-20.32 = -22.64 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:00 2006