| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,195,230 – 14,195,330 |
| Length | 100 |
| Max. P | 0.717882 |
| Location | 14,195,230 – 14,195,330 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 69.44 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -15.02 |
| Energy contribution | -14.88 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14195230 100 + 20766785 GUUUAUGGCAGCUGUUAGCUGAUCGAUCAGCGAAUGAUUGUUGCAAUCCUGAAGCACAAUUAUGUUGAACGGUUGUUCUCCCUGACGCUGUUGACCGUUU ....((((((((.....)))).((((.(((((.((((((((.((.........))))))))))...((((....)))).......))))))))))))).. ( -27.20) >DroVir_CAF1 20101 81 + 1 CGCUAAGGCAGUCGUCAGCUGAUCAAUCAGUGCACUAUUUUCGCAAUCCUGCAGCACAACAAUGCUGAACGGUGGCGGCUC------------------- .((....))(((((((((((((....)))))................((..(((((......)))))...)))))))))).------------------- ( -23.50) >DroPse_CAF1 21862 81 + 1 GCUUAUGGCCGUGGUUAGCUGAUCGAUGAGCGCAUUAUUGUCGCAGUCCUGCAGCACAAUGAUGUUCAGGGGCUGGCCCCC------------------- ((((((.(...(((....)))..).))))))((((((((((((((....))).).))))))))))...((((....)))).------------------- ( -28.30) >DroSim_CAF1 12612 100 + 1 GUUUAUAGCAGCUGUUAGCUGAUCGAUCAGCGAAUGAUUGUUGCAAUCCUGAAGCACAAUUAUGUUGAAGGGUUGUUCUCCCUGAUGCUGUUGACCGUUU .....(((((((.(((((..((.((((((.....))))))..((((((((..((((......))))..))))))))))...))))))))))))....... ( -29.50) >DroYak_CAF1 13803 100 + 1 ACUUAUGGCAGCAGUUAGCUGGUCGAUCAGCGAGUGAUUGUUGCAAUCCUGCAGCACAAUUAUGUUGAAGGGCUGAUCGCCCGGUUGCUGCUGACUGUUU ....(((((((((((.((((((.((((((((.......(((((((....)))))))((((...))))....)))))))).))))))))))))).)))).. ( -44.30) >DroPer_CAF1 20397 81 + 1 GCUGAUGGCCGUGGUUAGCUGAUCGAUGAGCGCAUUAUUGUCGCAGUCCUGCAGCACAAUGAUGUUCAGGGGCUGGCCCCC------------------- (((.((.(...(((....)))..).)).)))((((((((((((((....))).).))))))))))...((((....)))).------------------- ( -26.40) >consensus GCUUAUGGCAGCGGUUAGCUGAUCGAUCAGCGAAUGAUUGUCGCAAUCCUGCAGCACAAUUAUGUUGAAGGGCUGGUCCCC___________________ ......(((((..((..(((((....)))))..))..))))).(((((((..((((......))))..)))))))......................... (-15.02 = -14.88 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:59 2006