| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,181,493 – 14,181,592 |
| Length | 99 |
| Max. P | 0.999850 |
| Location | 14,181,493 – 14,181,592 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 68.81 |
| Mean single sequence MFE | -35.23 |
| Consensus MFE | -17.73 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.30 |
| Structure conservation index | 0.50 |
| SVM decision value | 4.25 |
| SVM RNA-class probability | 0.999850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14181493 99 - 20766785 CAUCCGUGUGUGGGCGAGUGAGUGCGAUGACAUAUAC--------------AUAUGUAUAGUAUAGUAUAUAUAUACAGAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .....(((..((((((..(((((((..(((..(((((--------------....)))))(((((.......)))))....)))..))))).))..))))))..)))...... ( -36.20) >DroYak_CAF1 26359 107 - 1 CAUCCGUGUGUGGGCGAGUGAGAGCGAAG-----UACAUAACAAUAUGUAUACAUGUAU-GUAUAUAAAGUAUAUACAGAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .....(((..((((((..((.(((((..(-----((((((....)))))))...(((((-((((.....))))))))).........)))))))..))))))..)))...... ( -41.80) >DroAna_CAF1 26816 91 - 1 CAUCCGUGAGUGGGUGAACAAGCGGGACGGC-----UAGAUC------------GG--UGGCA---UAUAUAUACAAAAAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .......(((((((((.....(((((.(((.-----..((.(------------(.--(....---...................).)).))...)))))))).))))))))) ( -27.70) >consensus CAUCCGUGUGUGGGCGAGUGAGAGCGAAG_C___UACA_A_C_________A_AUGUAU_GUAUA_UAUAUAUAUACAGAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .....(((..((((((.((((((((.............................................................))))).))).))))))..)))...... (-17.73 = -18.52 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:53 2006