Locus 4315

Sequence ID 2R_DroMel_CAF1
Location 14,180,198 – 14,180,318
Length 120
Max. P 0.908056
window6922

overview

Window 2

Location 14,180,198 – 14,180,318
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -37.98
Consensus MFE -24.28
Energy contribution -27.08
Covariance contribution 2.80
Combinations/Pair 1.07
Mean z-score -2.13
Structure conservation index 0.64
SVM decision value 1.06
SVM RNA-class probability 0.908056
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14180198 120 - 20766785
UCGACUCUUCGUCCUUUGGACUAUAAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUACUAAAACAAAUGCACCCCAGCCAAAUACUUACGGAUGAAGAC
.....(((((((((((((.....))))....(((.(((.....)))(((.(((((((((((....))))))))))))))..................)))..........))))))))). ( -37.30)
>DroSec_CAF1 24385 120 - 1
UCGACUCUUCGUCCUUUGGACUACCAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUCCUUAAACAAAUGCACCACAGCCAGAUACUUACGGAUUCUGAG
....(((...(((((((((....)))))...(((.(((.....)))...((((((((((((....))))))))))))....................)))..........))))...))) ( -34.70)
>DroSim_CAF1 24549 120 - 1
UCGACUCUUCGUCCUUUGGACUACCAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUCCUGAUACAAAUGCACCGCAGCCAGAUACUUACGGAUUCUGAG
....(((...(((((((((....)))))...(((.(((.(..(((.(((((((((((((((....)))))))))))).....)))...))).)))).)))..........))))...))) ( -37.10)
>DroEre_CAF1 25308 120 - 1
GAGACUCUGCGUCCUUUGGACUACGAGAAGAGGCAGCGGGAGGCCCGUAAGAUUCUACUCAAAUCGCAGGAGAAUCUGCUCCAGCACAUGAACGCCAGCCAGAUGCCCAUGGAUGCAGAC
.....(((((((((..(((.....(((.((((...(((((...)))))....)))).))).....(((((((......)))).((........))........)))))).))))))))). ( -40.60)
>DroYak_CAF1 24946 108 - 1
UCAACUCUGCGUCCUGUGGACUACGAGAGAAGGCAGCGGGAGGCGCGUGAGAUACUAAUCAAGUCGCAGGAGAAUCUGCUCCAGCACUUGGAC------------CCCAUGGAUGCAGAU
.....(((((((((.((...((.(....).))...))(((((...(....)...))..((((((.((.((((......)))).))))))))..------------)))..))))))))). ( -40.20)
>consensus
UCGACUCUUCGUCCUUUGGACUACCAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUCCUCAAACAAAUGCACCCCAGCCAGAUACUUACGGAUGCAGAC
.....(((((((((...((.(.....)....(((.(((.....)))...(((((((((((......)))))))))))....................))).....))...))))))))). (-24.28 = -27.08 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:52 2006