Locus 4312

Sequence ID 2R_DroMel_CAF1
Location 14,178,331 – 14,178,427
Length 96
Max. P 0.607359
window6919

overview

Window 9

Location 14,178,331 – 14,178,427
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.76
Mean single sequence MFE -21.29
Consensus MFE -13.92
Energy contribution -14.32
Covariance contribution 0.40
Combinations/Pair 1.16
Mean z-score -1.42
Structure conservation index 0.65
SVM decision value 0.15
SVM RNA-class probability 0.607359
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14178331 96 + 20766785
UUUGCCCCUC---------CACCAAAGUAA-CCGAAUUCCCCUGGGUC-----CACCA--------CUUCACACUUGACUUACA-GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG
...((((((.---------.....((((..-..(....)...(((...-----..)))--------......)))).......)-)))))...(((((((((....)))))))))..... ( -23.32)
>DroSec_CAF1 22540 93 + 1
UUUGCCCCGU---------CUUGAG---AA-CCGAAUCCCCCUGGGUC-----CACCU--------CUUCACACUUGACUUGCA-GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG
...(((((((---------(.((.(---((-......(((...)))..-----.....--------.))).))...))).....-)))))...(((((((((....)))))))))..... ( -23.74)
>DroSim_CAF1 22701 93 + 1
UUUGCCCCGU---------CUUGAG---AA-CCGAAUCCCCCUGGGUC-----CACCU--------CUUCACACUUGACUUACA-GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG
...(((((..---------..((((---..-..(.((((....)))).-----)....--------..(((....)))))))..-)))))...(((((((((....)))))))))..... ( -24.20)
>DroEre_CAF1 23439 107 + 1
UGUGCCCCUCCAGCACCAACUUGGG---AA-CCGAAUC-CCCUGGGUCCUCUGCACCU--------CUUCACACUUGACUUACUUGGGGCCACAAAGUUCGUUCCCAUGAACUUCUUCUG
((((((((....(((...(((..((---..-.......-.))..)))....)))....--------..(((....))).......)))).))))((((((((....))))))))...... ( -27.20)
>DroAna_CAF1 24212 102 + 1
AUAGCCUGCC---------CUUCUG---ACUUCUUCUCCACCUUUCUC-----CUUCUCUCUCUAGCUUCACACUUGACUUGGC-UGAGCCGCAAAGUUCGUUCCCAUGAUCUUCUUCUG
......(((.---------.....(---(.....))............-----.......(((.(((((((....)))...)))-))))..)))(((.((((....)))).)))...... (  -8.00)
>consensus
UUUGCCCCGC_________CUUGAG___AA_CCGAAUCCCCCUGGGUC_____CACCU________CUUCACACUUGACUUACA_GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG
...(((((..............................((....))......................(((....))).......)))))...(((((((((....)))))))))..... (-13.92 = -14.32 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:49 2006