| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,503,958 – 2,504,065 |
| Length | 107 |
| Max. P | 0.732329 |
| Location | 2,503,958 – 2,504,065 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 69.01 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -12.52 |
| Energy contribution | -11.80 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2503958 107 + 20766785 AUCGCAUCGAAAGUUUUGCGGUUUCGAGCCAUUUUUCCAUUAACUCGAAAUUCUAGAAGAUCAAUUCAAAUCAAUGUUCAUGUGAGAUUUUCCUUAUGAAUACCUGU--- ..((((.(....)...))))((((((((...............))))))))....(((......))).......((((((((.(.(.....)).)))))))).....--- ( -19.56) >DroSec_CAF1 13892 91 + 1 AUCGCAUCGAAAGUUUUGCGGUUUCGAGCCAUU-UACCAUUAACUCGAAAUUCUAGAAUAUCAAUU------------CAUGUGGGAUUUUCCUUGUGUAUCUC------ ..((((..((((((((..((((((((((.....-.........)))))))))...((((....)))------------)..)..))))))))..))))......------ ( -22.94) >DroSim_CAF1 13896 94 + 1 AUCGCAUCGAAAGUUUUGCGGUUUCCAGCCAUU-UUCCAUUAACUCGAAAUUCUAGAAGAUCAAUU------------CAUGUGGGAUUUUCCACAUGUAUCUCUGU--- .(((((.(....)...)))(((.....)))...-............)).....((((.(((.....------------((((((((....)))))))).))))))).--- ( -20.90) >DroEre_CAF1 14018 89 + 1 AUCGCAUCGAAAGUUUUGUGGUUGUGCGCCAUU-UUUCUGUAACUCAAAUUUUUAUAAGAUGAACU------------UAAAGGUAUUUUUCUUUUCGU--------GCU ...(((.(((((((((.(((((.....))))).-..(((((((.........)))).))).)))))------------)(((((......)))))))))--------)). ( -13.10) >DroYak_CAF1 13541 94 + 1 AUCGCAUCGAGAGUUUUGUGGUUUUGAGUCAUU-UUUCUGUAACUCAAAUGUU---GAGAUCACUU------------UUUAGGUAUUUUUACUUAUGUAGCUUUUCACU ((((((.(....)...))))))(((((((.((.-.....)).)))))))...(---((((...((.------------..((((((....))))))...))..))))).. ( -18.50) >consensus AUCGCAUCGAAAGUUUUGCGGUUUCGAGCCAUU_UUCCAUUAACUCGAAAUUCUAGAAGAUCAAUU____________CAUGUGGGAUUUUCCUUAUGUAUCUCU_____ ((((((.(....)...))))))((((((...............)))))).............................((((((((....))))))))............ (-12.52 = -11.80 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:26 2006