| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,164,998 – 14,165,093 |
| Length | 95 |
| Max. P | 0.668873 |
| Location | 14,164,998 – 14,165,093 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 79.88 |
| Mean single sequence MFE | -22.08 |
| Consensus MFE | -13.13 |
| Energy contribution | -14.22 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.668873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14164998 95 - 20766785 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCUGAGGAUGUCCUUACAGG-GACUA------GAA---AACGGCAAUGAAAU ....-..(((...((.((((((...((.(((((....))))))).)))))).))((((.....(((((....))-)))..------...---..)))).))).... ( -22.20) >DroSec_CAF1 9322 95 - 1 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGA-GACUA------GAA---AACGGCAAUGAAAU .(((-(((((..((((((((((...((.(((((....))))))).)))))...)))))...)))))))).....-.....------...---.............. ( -23.60) >DroSim_CAF1 9098 95 - 1 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGG-GACUA------GAA---AACGGCAAUGAAAU .(((-(((((..((((((((((...((.(((((....))))))).)))))...)))))...)))))))).....-.....------...---.............. ( -23.60) >DroEre_CAF1 9917 83 - 1 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGG-GACUA------GAA---AA------------ .(((-(((((..((((((((((...((.(((((....))))))).)))))...)))))...)))))))).....-.....------...---..------------ ( -23.60) >DroYak_CAF1 9399 90 - 1 AAAGGGACAUAAUUGCUGCCAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUUCUUACAGG-AAAUGAAAUCUGAA---AU------------ ..((((((((..((((((.....((((.(((((....)))))..))))....))))))...)))))))).((((-........))))..---..------------ ( -20.70) >DroPer_CAF1 11285 93 - 1 AAAG-GACAUAAUUGCUGCCAUAGAUUCUCGGGAGGAGUUGAAAGGUUGCAGCCACAGAAAAGACCUUCGCAGAGGACUU------GAGCCACAGGGGAA------ ....-.......((((.(((...(((((.(....))))))....))).))))((..........((((....)))).(((------(.....))))))..------ ( -18.80) >consensus AAAG_GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGG_GACUA______GAA___AACGGCAA______ .(((.(((((..((((((((((...((.(((((....))))))).))))))...))))...))))))))..................................... (-13.13 = -14.22 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:43 2006