Locus 4297

Sequence ID 2R_DroMel_CAF1
Location 14,126,401 – 14,126,521
Length 120
Max. P 0.982776
window6895

overview

Window 5

Location 14,126,401 – 14,126,521
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.99
Mean single sequence MFE -22.70
Consensus MFE -21.66
Energy contribution -21.34
Covariance contribution -0.32
Combinations/Pair 1.17
Mean z-score -1.54
Structure conservation index 0.95
SVM decision value 1.92
SVM RNA-class probability 0.982776
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14126401 120 + 20766785
CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAUAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU
...............(((((...(((((((((..((((.........))))((((....))))........))))....(((((.......)))))....)))))))))).......... ( -23.80)
>DroSec_CAF1 26575 120 + 1
CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU
...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......)))))....)))))))))).......... ( -25.20)
>DroSim_CAF1 39814 120 + 1
CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAGAUACGGCUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU
...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......)))))....)))))))))).......... ( -24.00)
>DroEre_CAF1 22009 118 + 1
CGUUACUUCUAAUUGCGGCAAAUAGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCCAAUAUAAUUUUGGAU--UUUUUCUUCCGAUAUUUUUCU
...............(((.....(((((((((..((((.((...)).))))((((....))))........))))....(((((.......))))).--..))))).))).......... ( -20.50)
>DroYak_CAF1 38030 118 + 1
CGUUACUUCUAAUUGCGGAAAAUAGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAU--UUUUUCUUCCGAUAUUUUUCU
...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......))))))--))))..))))).......... ( -20.00)
>consensus
CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU
...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......)))))....)))))))))).......... (-21.66 = -21.34 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:27 2006