Locus 4295

Sequence ID 2R_DroMel_CAF1
Location 14,122,088 – 14,122,182
Length 94
Max. P 0.780482
window6893

overview

Window 3

Location 14,122,088 – 14,122,182
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 88.77
Mean single sequence MFE -22.55
Consensus MFE -19.38
Energy contribution -19.62
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.86
SVM decision value 0.56
SVM RNA-class probability 0.780482
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14122088 94 + 20766785
GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAGACAAAAUAAAAAAAAAAAAAGCGUGUUAACA
.((((((((((((((((((((....))...))).)).)))))))..(......)))).)))................................. ( -22.90)
>DroSec_CAF1 22268 90 + 1
GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAAACAAAAUAAAAAAA----AAACUUGAUAACA
.((((((((((((((((((((....))...))).)).)))))))..(......)))).)))................----............. ( -22.90)
>DroSim_CAF1 35480 90 + 1
GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAAAGCAAAUAAAAAAA----AAACUUGAUAACA
.((((((((((((((((((((....))...))).)).)))))))..(......)))).)))................----............. ( -22.90)
>DroEre_CAF1 17431 83 + 1
GGGGCUCGUGAGGGAGCACGGGGGACUGCAGUGACUACUUUCACUAGGAAC---GAGACCCAAACCGA----AAAAA----AAGCUCGAUAACA
.((((((((.........(((....))).(((((......)))))....))---))).)))....(((----.....----....)))...... ( -21.50)
>consensus
GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAAACAAAAUAAAAAAA____AAACUUGAUAACA
.((((((((((((((((((..(......).))).)).)))))))..(......)))).)))................................. (-19.38 = -19.62 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:25 2006