Locus 4293

Sequence ID 2R_DroMel_CAF1
Location 14,104,767 – 14,104,864
Length 97
Max. P 0.575269
window6891

overview

Window 1

Location 14,104,767 – 14,104,864
Length 97
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 91.52
Mean single sequence MFE -38.82
Consensus MFE -29.48
Energy contribution -29.36
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.61
Structure conservation index 0.76
SVM decision value 0.08
SVM RNA-class probability 0.575269
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14104767 97 + 20766785
GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCAGGGA--------GACAUGGUGAAGGCCAGGAUGAGGGGCGACGCCCACCUGGGCUGCCGUUUAAU
.(((((....((((((---(((.......))))))))).)))))(..--------..)(((((..((.(((((.....((((...)))).))))).)))))))..... ( -38.40)
>DroSec_CAF1 13973 97 + 1
GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCAGGGA--------GACAUGGUGAAGGCCAGGAUGCGGGGCGACGCCCACCUGGGCUGCCGUUUAAU
.(((((....((((((---(((.......))))))))).)))))(..--------..)(((((..((.(((((.....((((...)))).))))).)))))))..... ( -38.40)
>DroSim_CAF1 27266 97 + 1
GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCAGGGA--------GACAUGGUGAAGGCCAGGAUGCGGGGCGACGCCCACCUGGGCUGCCGUUUAAU
.(((((....((((((---(((.......))))))))).)))))(..--------..)(((((..((.(((((.....((((...)))).))))).)))))))..... ( -38.40)
>DroEre_CAF1 9098 105 + 1
GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCCAGGGGACAUGGGGACAUGGUGAAGGCCAGGAUGAGGGGCAACGCCCACCUGGGCUGCCGUUUAAU
((((((.(..((((((---(((.......)))))))...((((......((((....)))).....))))..))..)..))))))((((....))))........... ( -42.50)
>DroYak_CAF1 24930 100 + 1
GUUGCCAUUGUUGUCUGCCGUUGAUGAGGAGCAGGCGGUGGCAAGGG--------GACGUGGUGAAGGACAGGAUGAGGGGCGACGCCCACCUGGGCUGCCGUUUAAU
.(..((((.(((.(((((((..(.((.....))..)..)))).))).--------)))))))..).........((((.((((..((((....)))))))).)))).. ( -36.40)
>consensus
GUUGCCAUUGUUGUCU___GUUGAUGAGGAGCAGGCAGGGGCAGGGA________GACAUGGUGAAGGCCAGGAUGAGGGGCGACGCCCACCUGGGCUGCCGUUUAAU
.(((((.((.(..((.......))..).))...)))))....................(((((..((.(((((.....((((...)))).))))).)))))))..... (-29.48 = -29.36 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:23 2006