Locus 429

Sequence ID 2R_DroMel_CAF1
Location 2,497,802 – 2,497,905
Length 103
Max. P 0.841310
window833

overview

Window 3

Location 2,497,802 – 2,497,905
Length 103
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 86.12
Mean single sequence MFE -26.46
Consensus MFE -17.86
Energy contribution -19.06
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.67
SVM decision value 0.75
SVM RNA-class probability 0.841310
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2497802 103 + 20766785
----CUUAAGAUUUGCCACCACAAUCGGA-AAGUAGCUAUUUUCUAGCUAGCUUUGCCCAUUAA----UCGAUUGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA
----.....(((.((((.....(((.(((-(((((((((.....))))).))))).)).)))..----..(((..(((....)))..))))))).))).............. ( -32.40)
>DroSec_CAF1 9386 107 + 1
----CCUAAGAUUUGCCACCACAAUUGGA-AAGUAGCUUUUUUCUAGCUAGCUUAGCCCAUUAUUCAUUCGAUAGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA
----.....(((.((((........(((.-((((((((.......)))).))))...)))..........(((.((((....)))).))))))).))).............. ( -26.30)
>DroSim_CAF1 9375 107 + 1
----CCUAGGAUUUGCCACCACAAUCGGA-AAGUAGCUUUUUUCUAGCUAGCUCAGCCCAUUAUUCAUUCGAUAGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA
----....((((.(((((((...((((((-...(((((.......)))))((...))..........)))))).((((....))))))).)))).))))............. ( -30.20)
>DroEre_CAF1 9579 108 + 1
ACAAUAUACAAUUUGCCACCGCAAUCUGAAAAGUAGCUAUUUUCUAGCUAGCGUGGCCCAAUAA----UCGAUAGUUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA
.............(((((((((...((....))((((((.....))))))))(((..(((((..----......)))))...))).))).)))).................. ( -25.30)
>DroYak_CAF1 9409 104 + 1
----UUUACAAUUUGGCACCACAACCUGAACAGUAGCUAUUUUGUAGCUAGCUUGGCCCAAUAA----UCGAUAGGUGACAACACUGGUCGGCACAUCCCACUCACUCAACA
----........((((..(((....((....))(((((((...)))))))...))).))))...----(((((.((((....)))).))))).................... ( -18.10)
>consensus
____CCUAAGAUUUGCCACCACAAUCGGA_AAGUAGCUAUUUUCUAGCUAGCUUAGCCCAUUAA____UCGAUAGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA
.........(((.((((................((((((.....))))))....................(((.((((....)))).))))))).))).............. (-17.86 = -19.06 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:24 2006