Locus 4287

Sequence ID 2R_DroMel_CAF1
Location 14,098,525 – 14,098,631
Length 106
Max. P 0.816935
window6881

overview

Window 1

Location 14,098,525 – 14,098,631
Length 106
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -43.38
Consensus MFE -33.20
Energy contribution -33.92
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -2.02
Structure conservation index 0.77
SVM decision value 0.67
SVM RNA-class probability 0.816935
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14098525 106 - 20766785
CUGUUUCUGCUCCCCAUUG--UUCACAUGUGGGGGAGUGGCGGAGCGGGAAGGUGGGGG-GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU
((((((((((((((((((.--(((.(....)))).))))).))))))))).((((((((-(((.....))).((((((......))))))..))))))))))))..... ( -45.80)
>DroSec_CAF1 7604 105 - 1
CUGUUACUGCUCCCUAUUG--UUCACAUGUGGGGGAGUGGUGGAUCGGGGAGUUG-GGG-GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU
(((((((..((((((..((--....))....))))))..))).....((((((((-..(-(.....))..).((((((......)))))))))))))...))))..... ( -40.70)
>DroSim_CAF1 20857 105 - 1
CUGUUUCUGCUCCCCAUUG--UUCACAUGUGGGGGAGUGGUGGAUCGGGGAGUUG-GGG-GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU
((((..(..((((((..((--....))....))))))..).......((((((((-..(-(.....))..).((((((......)))))))))))))...))))..... ( -39.60)
>DroEre_CAF1 2838 103 - 1
CUGUUUCUGGUCCCCAUUG--UUCACAUGUGGGGGAGUGGUGGGGCGGGGAGGUG-GG---AUACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU
..........(((((((((--....)).))))))).(..(((((((..(((((((-..---...))))))).((((((......)))))).)).)))))..)....... ( -42.50)
>DroYak_CAF1 18139 108 - 1
CUGUUUCUGGUCCCCAUUGUGUUCACAUGUGGGGGAGUGGUGGAGCGGGGCGGUG-GGGGAAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAUUCAAU
..........((((((((((....))).))))))).(..(((((((.((((((((-..((......))..)))))))).(((.....))).)).)))))..)....... ( -48.30)
>consensus
CUGUUUCUGCUCCCCAUUG__UUCACAUGUGGGGGAGUGGUGGAGCGGGGAGGUG_GGG_GAAACACUUUCACCGCUUACCGAAGAGCGGGGCUUCCACUGCAGUCAAU
..........(((((((...........))))))).(..(((((((..(((((((.........))))))).((((((......)))))).)).)))))..)....... (-33.20 = -33.92 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:13 2006