Locus 4283

Sequence ID 2R_DroMel_CAF1
Location 14,085,482 – 14,085,590
Length 108
Max. P 0.933135
window6873

overview

Window 3

Location 14,085,482 – 14,085,590
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.90
Mean single sequence MFE -20.95
Consensus MFE -11.93
Energy contribution -12.92
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.43
Structure conservation index 0.57
SVM decision value 1.23
SVM RNA-class probability 0.933135
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14085482 108 - 20766785
UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGGAUCCAGACACAGGGGAUAA------CAGAAAG-GGAAUGCCAAAAAAAAAAAAAAAGGAAAGGGG-----GAAACG
.......((((((.......)))).....(((((((..((.(..((((.........))))..------)...)).-.)))))))....................)).(-----....). ( -15.80)
>DroSec_CAF1 725 98 - 1
UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGUAUCCAGACACAGGGGAUAC------CAGAAAG-CGAAUGCCAAAA----------AAGAAAUGGG-----GAAACG
........(((((.......)))))(((.(((((((..((.(((((((.........))))))------)...)).-.)))))))....----------.(....))))-----...... ( -22.30)
>DroSim_CAF1 10400 83 - 1
UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGUAUCCAGACACAGGGGAUAC------CA----------------AA----------AAGAAAUGGG-----GAAACG
.......((((....((((...((((....))))...))))(((((((.........))))))------).----------------..----------.....))))(-----....). ( -21.20)
>DroYak_CAF1 11114 109 - 1
UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGCAUCCAGACACAGUGGAUACUCGUAACAGAGAGGGGAAUGCCAA-A----------AAGAAAUGGGGGGCAGAAACU
.......................(((((.(((((((..((....(((((.......))))).(((......)))))..)))))))..-.----------.(....)...)))))...... ( -24.50)
>consensus
UAAAUUACCAUAAAUUAAUAUUAUGCCCAGGCAUUUAAUUAGGUAUCCAGACACAGGGGAUAC______CAGAAAG_GGAAUGCCAAAA__________AAGAAAUGGG_____GAAACG
.......((((...(((((...((((....))))...)))))((((((.........)))))).........................................))))............ (-11.93 = -12.92 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:06 2006