Locus 428

Sequence ID 2R_DroMel_CAF1
Location 2,496,146 – 2,496,256
Length 110
Max. P 0.952252
window832

overview

Window 2

Location 2,496,146 – 2,496,256
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 92.06
Mean single sequence MFE -24.26
Consensus MFE -22.14
Energy contribution -22.18
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.53
Structure conservation index 0.91
SVM decision value 1.42
SVM RNA-class probability 0.952252
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2496146 110 - 20766785
CUUCUUAGUUUUCAAACGUGACUGCACCGAAUCAACACAUACAUAAACACUGGCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA
................(((..((((((.(..((...(((.(((...((((((....)))..)))..))).)))...(((((....)))))))..).)))))).))).... ( -25.80)
>DroSec_CAF1 7605 110 - 1
CUUCUUAGUUUUCAAACGUCACUGCACCGAAUUAACACACACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCUUUUCCCGAGGGGAACCUGUGCAGAACGACAA
.................(((.((((((.(..........................((((((......))))))......(((((....))))).).))))))...))).. ( -22.20)
>DroSim_CAF1 7588 110 - 1
CUUCUUAGUUUUCAAACGUCACUGCACCGAAUCAACGCACACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA
.................(((.((((((.(..((......................((((((......))))))...(((((....)))))))..).))))))...))).. ( -24.90)
>DroEre_CAF1 7695 106 - 1
CUUUUUAGUUCUCAAACGUCACUGCACUGAAACAA----CACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA
.................(((.((((((........----................((((((......))))))...(((((....)))))......))))))...))).. ( -24.20)
>DroYak_CAF1 7650 103 - 1
CUUCUUGGUUUUCAAACGGCACUGCACAUAA---A----CACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA
................((...(((((((...---.----................((((((......))))))...(((((....))))).....)))))))..)).... ( -24.20)
>consensus
CUUCUUAGUUUUCAAACGUCACUGCACCGAAUCAAC_CACACAUAAACACUGCCCACAGACUGUACUGUUUGUAUACCCUUUCCCGAGGGGAACCUGUGCAGAACGACAA
................(((..((((((............................((((((......))))))...(((((....)))))......)))))).))).... (-22.14 = -22.18 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:23 2006