Locus 4276

Sequence ID 2R_DroMel_CAF1
Location 14,081,850 – 14,081,969
Length 119
Max. P 0.661880
window6862

overview

Window 2

Location 14,081,850 – 14,081,969
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.76
Mean single sequence MFE -41.47
Consensus MFE -35.99
Energy contribution -37.77
Covariance contribution 1.78
Combinations/Pair 1.03
Mean z-score -1.99
Structure conservation index 0.87
SVM decision value 0.27
SVM RNA-class probability 0.661880
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14081850 119 + 20766785
GCCGAAAGCCAAUGAGCUAAAAGUGGCCAGGAAAUGUCAGUCAGGGCUUA-GGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAGUCGCGCU
((((..(((......))).....))))((..((..(((((.((((((...-(((.....)))...)))))))))))...))..))...(((.((((((((........)))))))).))) ( -43.80)
>DroSim_CAF1 6394 119 + 1
GCCGAAAGCCAAUGAGCCAAAAGCGGCCAGGAAAUGUCAGUCAGGGCUUA-GGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAGUCGCGCU
..(....)(((.((.(((......)))))......(((((.((((((...-(((.....)))...))))))))))).........)))(((.((((((((........)))))))).))) ( -45.10)
>DroYak_CAF1 7452 113 + 1
GACGCAAGCCAAUGAGCUGAAAGCGGCCAGGAAAUGUCAGUCAGGGCUUAAGGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAG-------
...((((.((..((.((.....((..(((.(....(((((.((((((....(((.....)))...))))))))))).......).))).))......)).))..)).))))..------- ( -35.50)
>consensus
GCCGAAAGCCAAUGAGCUAAAAGCGGCCAGGAAAUGUCAGUCAGGGCUUA_GGCUUUUUGCCGCUGCUCUGCUGAUUGAUUAAUGUGGAGCACGAUUGCAUAAGGGAUUGCAGUCGCGCU
..(....)(((.((.(((......)))))......(((((.((((((....(((.....)))...))))))))))).........)))(((.((((((((........)))))))).))) (-35.99 = -37.77 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:55 2006