| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,080,239 – 14,080,358 |
| Length | 119 |
| Max. P | 0.807593 |
| Location | 14,080,239 – 14,080,358 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.54 |
| Mean single sequence MFE | -35.11 |
| Consensus MFE | -30.26 |
| Energy contribution | -30.71 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14080239 119 - 20766785 UCCAGC-ACGGGCUAAAAAUAACAACCAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUGCAGGAAUUUUUAUGCUUAUGCGUCUGUGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((-(..((((((((((..(.............(((..((....))..)))((....)).)..))))))).)))..)))..(((.(((((((..............)))))))))). ( -37.34) >DroSim_CAF1 4799 119 - 1 UCCAGC-ACGGGCUAAAAAUAACAACCAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUGCAGGAAUUUUUAUGCUUAUGCGUCUGCGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((-(..((((((((((..(.............(((..((....))..)))((....)).)..))))))).)))..)))..(((.(((((((..............)))))))))). ( -37.34) >DroYak_CAF1 5477 120 - 1 UCCAGCCAGGAGCUAAAAAUAACACACAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUUAAGGAAUUUUUAUGCUUAUGCGUCUGCGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((...(((((((((((................(((..((....))..)))...((.....))))))))).))))..))..(((.(((((((..............)))))))))). ( -30.64) >consensus UCCAGC_ACGGGCUAAAAAUAACAACCAAAUCCAUUGCCCUCCGUGAGGGAGGCGCAUCUGCAGGAAUUUUUAUGCUUAUGCGUCUGCGAGAUUCGCUCAAUUUCAAAAGAAUUUCCAGC ....((.(..((((((((((..(.............(((..((....))..)))((....)).)..))))))).)))..)))..(((.(((((((..............)))))))))). (-30.26 = -30.71 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:51 2006