Locus 4265

Sequence ID 2R_DroMel_CAF1
Location 14,076,631 – 14,076,743
Length 112
Max. P 0.942712
window6844

overview

Window 4

Location 14,076,631 – 14,076,743
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 94.89
Mean single sequence MFE -40.50
Consensus MFE -37.47
Energy contribution -37.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.51
Structure conservation index 0.93
SVM decision value 1.33
SVM RNA-class probability 0.942712
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14076631 112 + 20766785
UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUAGCAA--------GCGGCAA
((((((.........))))))(((((((((((.(..(((((.((((.....((((((..(((......)))..).))))).......)))).))))).).))).)--------))))))) ( -37.90)
>DroSim_CAF1 1149 112 + 1
UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUAGCAA--------GCGGCAA
((((((.........))))))(((((((((((.(..(((((.((((.....((((((..(((......)))..).))))).......)))).))))).).))).)--------))))))) ( -37.90)
>DroYak_CAF1 1318 120 + 1
UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUGGCAAGCAGCAAAGCGGCAA
.(((((.........)))))((((((((((((.((((((((.((((.....((((((..(((......)))..).))))).......)))).)))))...))).))))))..)))))).. ( -45.70)
>consensus
UCUGCUGCAUAAAUAAGUAGGUUGCUGCUGUUCGCCUGCCUGGCGGCCUGACAUGUGAAUUGAUAUGCCAACGCAACAUGGCUAAAACCGCAAGGCAACUAGCAA________GCGGCAA
..((((((...........((((...((.(..((((.....))))..)...((((((..(((......)))..).)))))))...))))((.((....)).))..........)))))). (-37.47 = -37.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:38 2006