Locus 426

Sequence ID 2R_DroMel_CAF1
Location 2,485,656 – 2,485,749
Length 93
Max. P 0.967472
window829 window830

overview

Window 9

Location 2,485,656 – 2,485,749
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 91.76
Mean single sequence MFE -32.73
Consensus MFE -25.66
Energy contribution -26.34
Covariance contribution 0.69
Combinations/Pair 1.09
Mean z-score -2.40
Structure conservation index 0.78
SVM decision value 0.92
SVM RNA-class probability 0.880953
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2485656 93 + 20766785
CUUUUCCGGCUUUUACAAUAUGUUCGCGCUGUUUGAUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAGGUUCUGGGGCUCAAUGCCGCCGG
.....(((((.................((((((..........)))))).((((..((((.(.............).))))...))))))))) ( -27.62)
>DroSec_CAF1 39816 93 + 1
CUUUUCCGGCUUUUACAAUAUGUUGGCGCUGUUUGGUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAUGUACUGUGGCUCAAUGCCGCCGG
.....(((((....(((.(((((((((((((((.((....)).)))))).(((((...))))).))))))))).)))(((.....)))))))) ( -37.80)
>DroSim_CAF1 40052 93 + 1
CUUUUCCGGCUUUUACAAUAUGUUGGCGCUGUUUGGUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAGGUUCUGUGGCUCAAUGCCGCCGG
.....(((((....(((..((.(((((((((((.((....)).)))))).(((((...))))).))))).))..)))(((.....)))))))) ( -35.70)
>DroYak_CAF1 38398 93 + 1
CUUUUCCGGCUUUUACAAUUUGUUCGCGCUGCUUGGUUAGUUUAACAGCUGGCAGUAGCUGCUUGUUCAGGUUGUGUGCCUCAAUGCCGCUGG
.....(((((...(((((((((..((.((.(((..((((((......))))))...))).)).))..))))))))).((......)).))))) ( -29.80)
>consensus
CUUUUCCGGCUUUUACAAUAUGUUCGCGCUGUUUGGUAUGCUUAACAGCUGGCAGUAGCUGCUUGUCGAGGUUCUGUGGCUCAAUGCCGCCGG
.....(((((.................((((((.((....)).)))))).((((..((((((.............))))))...))))))))) (-25.66 = -26.34 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 2,485,656 – 2,485,749
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 91.76
Mean single sequence MFE -25.67
Consensus MFE -23.04
Energy contribution -23.35
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -2.18
Structure conservation index 0.90
SVM decision value 1.61
SVM RNA-class probability 0.967472
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2485656 93 - 20766785
CCGGCGGCAUUGAGCCCCAGAACCUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUAUCAAACAGCGCGAACAUAUUGUAAAAGCCGGAAAAG
((((((((.....)))........(((.(..((((...))))..((((((..........)))))))))).............)))))..... ( -26.20)
>DroSec_CAF1 39816 93 - 1
CCGGCGGCAUUGAGCCACAGUACAUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUACCAAACAGCGCCAACAUAUUGUAAAAGCCGGAAAAG
((((((((.....)))((((((.........((((...))))..((((((..........)))))).......))))))....)))))..... ( -28.70)
>DroSim_CAF1 40052 93 - 1
CCGGCGGCAUUGAGCCACAGAACCUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUACCAAACAGCGCCAACAUAUUGUAAAAGCCGGAAAAG
((((((((.....)))...........((((((((...))))..((((((..........)))))).........))))....)))))..... ( -26.70)
>DroYak_CAF1 38398 93 - 1
CCAGCGGCAUUGAGGCACACAACCUGAACAAGCAGCUACUGCCAGCUGUUAAACUAACCAAGCAGCGCGAACAAAUUGUAAAAGCCGGAAAAG
....((((.....((((......(((......)))....)))).((((((..........)))))).................))))...... ( -21.10)
>consensus
CCGGCGGCAUUGAGCCACAGAACCUCGACAAGCAGCUACUGCCAGCUGUUAAGCAUACCAAACAGCGCCAACAUAUUGUAAAAGCCGGAAAAG
((((((((.....)))...........((((((((...))))..((((((..........)))))).........))))....)))))..... (-23.04 = -23.35 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:21 2006