Locus 4259

Sequence ID 2R_DroMel_CAF1
Location 14,073,229 – 14,073,325
Length 96
Max. P 0.542293
window6838

overview

Window 8

Location 14,073,229 – 14,073,325
Length 96
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.05
Mean single sequence MFE -32.25
Consensus MFE -20.98
Energy contribution -21.03
Covariance contribution 0.06
Combinations/Pair 1.32
Mean z-score -1.15
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.542293
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14073229 96 - 20766785
--------U-UCUUUUCCAU-CCAAACAGAGCCUGCGCAAGCACUGCGAUGUGA-AGGAGGUGGUCGAGGCCCAUGUGAUCAUGCGCCAGGUGGCGCACAACAUUGA
--------.-((((..((((-((..(((..((.(((....)))..))..)))..-..).)))))..)))).(.((((.....((((((....))))))..)))).). ( -32.80)
>DroVir_CAF1 584 100 - 1
-----CUAACUCCCUCGCUC-CCUUGUAGAGCCUGCGCAAGCACUGCGAUGUCA-AGGAGGUGGCCGAGGCGUAUGCCAUAAUGCGUCAGGUAGCGCAUCACAUUGA
-----....(((..((((..-(((((((..((.(((....)))..))..)).))-)))..))))..)))((((.((((...........)))))))).......... ( -33.70)
>DroWil_CAF1 707 104 - 1
GCCUUUCUU-CUUUUUCUUU-AUCGACAGAGCCUACGUAAGCAUUGCGAUGUCA-AGGAGGUGGCCGAGGCGUAUGCCAUAAUGCGUCAGGUGGCCCACAAUAUUGA
......(((-(((......(-((((.(((.((........)).))))))))..)-)))))(((((((.(((((((......)))))))...))).))))........ ( -29.50)
>DroYak_CAF1 1014 89 - 1
-----------------CAUCCCAAACAGAGUCUGCGCAAGCACUGCGAUGUGA-AGGAGGUGGUCGAGGCGCAUGUGAUCAUGCGUCAGGUGGCGCACAACAUUGA
-----------------..(((...(((..((.(((....)))..))..)))..-.))).(((((((.((((((((....))))))))...)))).)))........ ( -32.70)
>DroAna_CAF1 1140 96 - 1
--------U-UUAUUUAUUU-UGAUAUAGAGCCUCCGCAAGCACUGCGACGUCA-AGGAGGUGGCCGAGGCCUAUGCCAUAAUGCGCCAGGUGGCGCACAACAUCGA
--------.-..........-((.(((((.(((((((((.....))))..((((-......)))).)))))))))).))...((((((....))))))......... ( -31.40)
>DroPer_CAF1 12176 97 - 1
--------U-CUUUCUCCAC-AUUCACAGAGCCUGCGCAAGCACUGCGAUGUCAAAGGAGGUGGCCGAGGCCUAUGUGAUCAUGCGCCAGGUGGCGCACAACAUUGA
--------.-..........-..(((((..((((((....)).(.((.((.((....)).)).)).)))))...)))))...((((((....))))))......... ( -33.40)
>consensus
________U_UUUUUUCCAU_CCAAACAGAGCCUGCGCAAGCACUGCGAUGUCA_AGGAGGUGGCCGAGGCCUAUGCCAUAAUGCGCCAGGUGGCGCACAACAUUGA
.........................(((..((((((....)).(.((.((.((....)).)).)).)))))...))).....((((((....))))))......... (-20.98 = -21.03 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:32 2006