Locus 4251

Sequence ID 2R_DroMel_CAF1
Location 14,031,807 – 14,031,927
Length 120
Max. P 0.884176
window6827

overview

Window 7

Location 14,031,807 – 14,031,927
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 98.19
Mean single sequence MFE -30.26
Consensus MFE -29.74
Energy contribution -29.80
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -2.11
Structure conservation index 0.98
SVM decision value 0.93
SVM RNA-class probability 0.884176
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14031807 120 - 20766785
CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUAUACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU
..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((.......(....)((((......))))..)))))))))))...........)). ( -30.30)
>DroSim_CAF1 61825 120 - 1
CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUAUACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU
..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((.......(....)((((......))))..)))))))))))...........)). ( -30.30)
>DroEre_CAF1 65230 120 - 1
CAGGGGGAGGACCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUACACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU
..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((((.....))....((((......))))..)))))))))))...........)). ( -31.10)
>DroYak_CAF1 63907 120 - 1
CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAUUGAAAUUCACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU
.(((.(((((((((((.................))(((((...(((((.((((((((.....((((.......))))..))))))))..)))))...)))))))))))))).)))..... ( -29.33)
>consensus
CAGGGGGAGGGCCAGCUGUCUUUUCCUAUUUCUGCAUAAAUCAUGCAAUUUGAUUGCCAAUGAAAUACACUCUGUUUACGCAAUCGAUUUUGCACAUUUUAUUGGCCUUUUGUUUACGCU
..(((..(((((.....)))))..)))......((...(((((.......)))))(((((((((((.......(....)((((......))))..)))))))))))...........)). (-29.74 = -29.80 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:21 2006