Locus 4248

Sequence ID 2R_DroMel_CAF1
Location 14,029,987 – 14,030,107
Length 120
Max. P 0.925641
window6819

overview

Window 9

Location 14,029,987 – 14,030,107
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -22.00
Consensus MFE -19.70
Energy contribution -19.51
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 0.90
SVM decision value 1.17
SVM RNA-class probability 0.925641
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14029987 120 + 20766785
GCAUUUACAGCGAAUUCGCAUUCCAAAAAUCAACAAAGUGCAAAACUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACAUUGUAAGAACAUGGGAAACAAA
.........(((....))).(((((....(((((...(((((((....((.....))......)))))))))))).((((..(((((....)))))..)))).......)))))...... ( -21.00)
>DroSim_CAF1 60054 120 + 1
GCAUUUACAGCGAAUUCGCAUUCCAAAAAUCAACAAAGUGCAAAACUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACAUUGUAAGAACAUGGGAAACAAA
.........(((....))).(((((....(((((...(((((((....((.....))......)))))))))))).((((..(((((....)))))..)))).......)))))...... ( -21.00)
>DroEre_CAF1 63324 120 + 1
GCAUUUACAGCGAAUUCGCAUUCCAAAAACCAACAAUGUGUAAAAUUCUGCAACACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUGUAGUACAUUGUAAGAACAUGGGAAACAAA
.........(((....))).(((((........(((((((((((...................)))))))))))(((...(((((.....)))))....))).......)))))...... ( -25.01)
>DroYak_CAF1 61938 120 + 1
GCAUUUACAGCGAAUUCGCAUUCCAAAAACCAACAAAGUGCAAAAUUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACGUUGUACGAACAUGGGAAACAAA
.........(((....))).(((((........(((.(((((((.((.((.....))...)).))))))).))).....((((((((....))))).))).........)))))...... ( -21.00)
>consensus
GCAUUUACAGCGAAUUCGCAUUCCAAAAACCAACAAAGUGCAAAACUUUGCCAUACAUUCAACUUUGCACGUUGACAUAAACUACUAUAUAUAGUACAUUGUAAGAACAUGGGAAACAAA
.........(((....))).(((((........(((.(((((((...................))))))).)))..((((..(((((....)))))..)))).......)))))...... (-19.70 = -19.51 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:14 2006