| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,029,547 – 14,029,663 |
| Length | 116 |
| Max. P | 0.649670 |
| Location | 14,029,547 – 14,029,663 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.82 |
| Mean single sequence MFE | -33.67 |
| Consensus MFE | -27.25 |
| Energy contribution | -29.00 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14029547 116 + 20766785 ACGCAAAAAUUCGUCGAACGCAAUUGAUAUCGAGCGUUUGUCUGGAUUAAAGCGGAAAUCAGGGAUAAUCAGUGAUUUUCCAAAGCGCGAGAGUG----UGUGUGUGAAAAAUCCGCUUU .......((((((.(((((((..(((....)))))))))).).)))))((((((((..(((..(.....)..)))(((((((..((((....)))----)...)).))))).)))))))) ( -35.10) >DroSim_CAF1 59607 116 + 1 ACGCAAAAAUUCGUCGAACGAAAUUGAUAUCGAGCGUUUGUCUGGAUUUAAGCGGAAAUCAGGGAUAAUCGGUGAUUUUCCAAAGCGCGCGAGUG----UGUGUGUGAAAAAUCCGCUUU ......(((((((.((((((...(((....))).)))))).).))))))(((((((..(((..(.....)..)))(((((((..((((....)))----)...)).))))).))))))). ( -33.60) >DroEre_CAF1 62868 116 + 1 ACGCAUAAAUUCGUCGAACGAAUUUGAUAUCGAGCGUUUGCCUGGAUUAAAGCGGAAAUCAGCGAAAAUCGGGGAUUUUCCAAAGCGCGCGCGUG----UGUGUGUGAAAAAUCCGCUUA ..((.((((((((.....))))))))...((((...(((((...((((........)))).)))))..))))(((((((.((..((((((....)----))))).)).)))))))))... ( -33.30) >DroYak_CAF1 61487 120 + 1 ACGCUGAAAUUCGUCGAACGAAAUUGAUAUCGAGCGUUUACCUGGAUUAAAGCGGAAAUCAGCGAAAUUCAGUGAUUUUCCAAAGCGCGCGAGUGUGUGUGUGUGUGAAAAAUCCGCUUC .(((((((.(((((.(((((...(((....))).))))).....((((........)))).))))).))))))).(((((((..((((((....))))))...)).)))))......... ( -32.70) >consensus ACGCAAAAAUUCGUCGAACGAAAUUGAUAUCGAGCGUUUGCCUGGAUUAAAGCGGAAAUCAGCGAAAAUCAGUGAUUUUCCAAAGCGCGCGAGUG____UGUGUGUGAAAAAUCCGCUUU .......((((((.((((((...(((....))).)))))).).))))).(((((((......((((((((...))))))))...(((((((........)))))))......))))))). (-27.25 = -29.00 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:13 2006