Locus 4243

Sequence ID 2R_DroMel_CAF1
Location 14,021,521 – 14,021,616
Length 95
Max. P 0.741642
window6809

overview

Window 9

Location 14,021,521 – 14,021,616
Length 95
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -27.92
Consensus MFE -20.60
Energy contribution -20.76
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.63
Structure conservation index 0.74
SVM decision value 0.45
SVM RNA-class probability 0.741642
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14021521 95 - 20766785
GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUUAGCCCGCUUCAUGGC----CGAAUGCCAAAUUCC
.....((((((.((((((((((((.((..((((((.......)))))).))))))).(((.....)))........))))----))).))))))..... ( -28.90)
>DroSec_CAF1 52135 95 - 1
GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCGAAUUAGUUUAAUUAGCCCGCUUCAUGGC----CGAAUGCCAAAUUCC
.....((((((.(((((((....(((...((((((.......)))))).........(((.....))).)))....))))----))).))))))..... ( -27.60)
>DroSim_CAF1 51556 95 - 1
GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUUAGCCGGCUUCAUGGC----CGAAUGCCAAAUUCC
.....((((((.((((((((((((.((..((((((.......)))))).))))))).(((.....)))........))))----))).))))))..... ( -28.90)
>DroEre_CAF1 54600 95 - 1
GCUCAUUGGUAAUUGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUGAGCCCGCUUCAUGGC----CGAAUGCCAAAUUCU
.....((((((.((((((.(((((.((..((((((.......)))))).)))))))......(((((.....))))))))----))).))))))..... ( -27.80)
>DroYak_CAF1 53099 98 - 1
GCUUAU-GGUAAUUGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUGAGCCCGCUUCAUGGCCAGCCGAAUGCCAAAUUCU
.....(-((((.(((((..(((((.((..((((((.......)))))).))))))).......((.(((........)))))))))).)))))...... ( -26.40)
>consensus
GCUUAUUGGUAAUCGGUCAGAUUGUGAUUUGCGCACAAUAAAUGCGUAUUCCAAUUAGUUUAAUUAGCCCGCUUCAUGGC____CGAAUGCCAAAUUCC
.....((((((.(((....(((((.((..((((((.......)))))).)))))))..........(((........)))....))).))))))..... (-20.60 = -20.76 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:04 2006