Locus 424

Sequence ID 2R_DroMel_CAF1
Location 2,472,742 – 2,472,833
Length 91
Max. P 0.877881
window827

overview

Window 7

Location 2,472,742 – 2,472,833
Length 91
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 77.16
Mean single sequence MFE -25.76
Consensus MFE -12.12
Energy contribution -12.60
Covariance contribution 0.48
Combinations/Pair 1.11
Mean z-score -2.12
Structure conservation index 0.47
SVM decision value 0.90
SVM RNA-class probability 0.877881
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2472742 91 - 20766785
GACAGCAUUUA-----GCCCCUGUGUUUGCUAAAAGGUUAUAGUAGUAAGCCGAAAGGCAGAAGGCUGUGCUACUGCACAC------ACAGGCACUAAAAUU
.......((((-----(..(((((((.(((.....(((.(((((..(..(((....)))..)..))))))))...))).))------)))))..)))))... ( -32.90)
>DroSec_CAF1 26966 99 - 1
GACAGCAUUUACCCCUGCCCCCUUGUUUGCUAAAAGGUUAUAG---UAAGUCGAAAGGCAGAAGGCUGUGCUACUGCACACGGAGGCACAGACACUAAAAUU
..............(((((...((((((((((........)))---)))).)))..))))).((.(((((((.(((....))).)))))))...))...... ( -27.80)
>DroSim_CAF1 27281 99 - 1
GACAGCAUUUACCCCUGCCCCCUUGUUUGCUAAAAGGUUAUAG---UAAGUCGAAAGGCAGAAGACUGUGCUACUGCACACGGAGGCACAGACACUAAAAUU
..............(((((...((((((((((........)))---)))).)))..)))))....(((((((.(((....))).)))))))........... ( -27.30)
>DroEre_CAF1 25980 79 - 1
GACAGCAUUUACC-----CCCGGUGUUUGCUAAAAGGUU--------AAGUCGAAAGGCAGAAGGCUGUGCAG----------UAGCACAGACACUAAAAUU
...((((..((((-----...))))..))))........--------..(((....)))...((.((((((..----------..))))))...))...... ( -23.70)
>DroYak_CAF1 25955 79 - 1
GACCGCAUUUACC-----CCCGAUGUUUGCUAAAAGGUU--------AAGUCUAAAGGUAGAAGGCUGUGCAG----------UAGCACAAGCACUAAAAUU
.......((((((-----...(((....(((....))).--------..)))....))))))(((((((((..----------..)))).))).))...... ( -17.10)
>consensus
GACAGCAUUUACC___GCCCCCGUGUUUGCUAAAAGGUUAUAG___UAAGUCGAAAGGCAGAAGGCUGUGCUACUGCACAC__AAGCACAGACACUAAAAUU
...((((..((............))..))))....(((...........(((....)))....(.((((((..............)))))).))))...... (-12.12 = -12.60 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:18 2006