| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,982,820 – 13,982,930 |
| Length | 110 |
| Max. P | 0.601206 |
| Location | 13,982,820 – 13,982,930 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.66 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -20.59 |
| Energy contribution | -21.45 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13982820 110 - 20766785 GUGGAUUAUUUAGUUAAACGAAACCAUUAACUUUUC-GAAUCCCAGGUGCAAACCGUGUCGAUCAGCUACCUACGCUGCCUGAUCGAGCACGUACGCUGCUACAUCCUGGA ..(((((....((((((.........))))))....-.)))))((((.(((...(((((((((((((..........).)))))))).)))).....))).....)))).. ( -30.40) >DroSec_CAF1 21117 103 - 1 GUGGAU--------UAAACGUACCCUUUAACCUUUCCGAAUACCAGGUGCAAACCGUGUCGAUUAGCUACCUGCGCUGCCUGAUCGAGCACGUACGCUGCUACAUCCUGGA .((((.--------....................))))....(((((.(((...(((((((((((((..........).)))))))).)))).....))).....))))). ( -25.60) >DroSim_CAF1 20216 110 - 1 GUGGAUUAUUUAGUUAAACGUAACCUUUAACCUUUC-AAAUACCAGGUGCAAACCGUGUCGAUCAGCUACCUGCGCUGCCUGAUCGAGCACGUGCGCUGCUACAUCCUGGA ((((........((((((.......)))))).....-........((((((...(((((((((((((..........).)))))))).)))))))))).))))........ ( -28.60) >DroEre_CAF1 21528 102 - 1 GAAGUC--------UAAUCGAAACCCUUAACUUCAC-GAUCCCCAGGUGCAAACCGUGUCGAUCAGCUACCUACGUUGCCUGAUCGAGCACGUGCGCUGCUACAUCCUGGA (((((.--------(((.........))))))))..-.....(((((.(((..((((((((((((((.((....)).).)))))))).)))).)...))).....))))). ( -30.10) >DroYak_CAF1 21596 88 - 1 --------------------AAACCCUUUAUUCCA---AACGCCAGGUUCAAACCGUAUCUAUCAGCUACCUACGCUGCCUGAUCGAGCACGUGCGCUGCUACAUCCUGGA --------------------...............---....(((((.......((.(((...((((.......))))...)))))((((.(....)))))....))))). ( -19.00) >DroPer_CAF1 20677 103 - 1 GUGGAA--------UAAACUAAUUGAUUCGCCCCACCCCGAUCCAGGUACAAACGGUGUCGAUCAGCUAUCUGCGCUGCCUGAUCGAGCACGUCCGCUGCUAUAUCCUCGA (((((.--------........(((..(((........)))..))).........((((((((((((..........).)))))))).))).))))).............. ( -23.60) >consensus GUGGAU________UAAACGAAACCAUUAACCUCAC_GAAUACCAGGUGCAAACCGUGUCGAUCAGCUACCUACGCUGCCUGAUCGAGCACGUGCGCUGCUACAUCCUGGA ..........................................(((((.(((...(((((((((((((..........).)))))))).)))).....))).....))))). (-20.59 = -21.45 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:57 2006