| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,958,085 – 13,958,185 |
| Length | 100 |
| Max. P | 0.977976 |
| Location | 13,958,085 – 13,958,185 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 71.89 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -9.71 |
| Energy contribution | -10.15 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.977976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13958085 100 + 20766785 CACUGGAGACACAUGUUUCCGCUUAUCGGGG--C--UGCAGCUCAGCCUCCACCCCCCUCCCACAAUACUGCUGGUCCCUCC-CCAUUUUCCCAUUUCUCUGC---UC ....((((((....))))))((.....((((--(--((.....))))).)).........(((((....)).))).......-..................))---.. ( -21.50) >DroSec_CAF1 11999 96 + 1 CACUGGAGACACAUGUUUCCGCUUAUCGGGG--C--UGCAGCUCAGCCUCCUAGCCCCACCC----UACUGCUGGUCCCACC-CCAUUUUCCCAUUUCUCUGC---UC ....((((((....))))))((.....((((--(--((.....)))))))(((((.......----....))))).......-..................))---.. ( -23.40) >DroEre_CAF1 11726 90 + 1 CACUGGAGACACAUGUUUCCGCUUAUCGGGG--C--UGCAGCACAGCCUC-------CUCCC----UACUGCUGUCCCUCCCCCCAUUUUCCCAUUUCUGUGC---UC (((.((((((....)))))).......((((--(--.((((.........-------.....----..)))).))))).....................))).---.. ( -22.39) >DroYak_CAF1 12441 98 + 1 CACUGGAGACACAUGUUUCCGCUUAUCGGGG--C--UGCAGCACAGCCUCCUC-CUCCUCCC----UACUGCUGACCCUCCC-CAAUUUUUCCAUUUCUGUGCCUCUC (((.((((((....)))))).......((((--.--..(((((..........-........----...))))).....)))-)...............)))...... ( -21.30) >DroMoj_CAF1 14714 95 + 1 UAAUGCAUACACAUGUUUCGGCUUAUCGCCACCCUCUGCUCUCCAGGGUC----CCCCACUCUCGCUGCUUCUCUUUGCUGC-CCCUCUAUUCGCUUCUC-------- ....((.............(((.....)))(((((.........))))).----..........((.((........)).))-..........)).....-------- ( -14.50) >consensus CACUGGAGACACAUGUUUCCGCUUAUCGGGG__C__UGCAGCACAGCCUCC___CCCCUCCC____UACUGCUGGUCCCCCC_CCAUUUUCCCAUUUCUCUGC___UC ....((((((....)))))).......((((......((((...........................))))...))))............................. ( -9.71 = -10.15 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:53 2006