Locus 4234

Sequence ID 2R_DroMel_CAF1
Location 13,957,460 – 13,957,562
Length 102
Max. P 0.584031
window6796

overview

Window 6

Location 13,957,460 – 13,957,562
Length 102
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -15.52
Consensus MFE -12.20
Energy contribution -12.16
Covariance contribution -0.04
Combinations/Pair 1.06
Mean z-score -1.50
Structure conservation index 0.79
SVM decision value 0.10
SVM RNA-class probability 0.584031
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13957460 102 - 20766785
UACUCUACUA-UUCACUGCUCUC-------UUUCGAGAUCUCCGCGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUG-AGCACAAA
..........-......((((((-------....)))).....(.((((((......)))))).)...))................((((((((.......)-))))))). ( -16.00)
>DroSec_CAF1 11358 100 - 1
UACUUUACUAAUUCAC---UCUC-------UUUCGAGAUCUCCGCGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA-AGCACAAA
................---....-------....((((((..((((......))))...)))))).....................((((((((.......)-))))))). ( -14.90)
>DroSim_CAF1 11315 100 - 1
UACUCUACUAAUUCAC---UCUC-------UUUCGAGAUCUCCGCGAUCAGCUGUGACUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA-AGCACAAA
................---....-------....((((((..((((......))))...)))))).....................((((((((.......)-))))))). ( -14.90)
>DroEre_CAF1 11111 93 - 1
------A-UUAGUCAC---UCUC-------UUUCGAGAUCUCCACGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA-AGCACAAA
------.-........---....-------....((((((..((((......))))...)))))).....................((((((((.......)-))))))). ( -15.30)
>DroYak_CAF1 11779 104 - 1
----CAACUAAUUCAC---GCUCAUUCGUCUGUCGAGAUAUCCACGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUAAAGCACAAA
----............---............((.((((.(((((((......))))...))).)))).))................(((((((((......))))))))). ( -16.50)
>consensus
UACUCUACUAAUUCAC___UCUC_______UUUCGAGAUCUCCGCGAUCAGCUGUGCCUGAUUUCUCUGCUCAUUUCACCAUUCAAUUGUGUUUUCUACUUA_AGCACAAA
..................................((((((..((((......))))...)))))).....................(((((((..........))))))). (-12.20 = -12.16 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:52 2006