Locus 4233

Sequence ID 2R_DroMel_CAF1
Location 13,937,641 – 13,937,750
Length 109
Max. P 0.942769
window6795

overview

Window 5

Location 13,937,641 – 13,937,750
Length 109
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 73.94
Mean single sequence MFE -33.13
Consensus MFE -16.86
Energy contribution -18.76
Covariance contribution 1.89
Combinations/Pair 1.10
Mean z-score -2.57
Structure conservation index 0.51
SVM decision value 1.33
SVM RNA-class probability 0.942769
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13937641 109 - 20766785
GGCUCCGCUUGUU---GAUGAUUCGUGUCAGCACGA-AGACGAGAAAUGCCAC--AAGAAGAGCGCUAAACAAAAGGGGCAGCAACAGGCAGCAGCAGCAGUAGCAACCAGCAAG
.(((..(((((((---(....((((((....)))))-)...............--.......((.((........)).))..)))))))).((.((....)).))....)))... ( -28.40)
>DroPse_CAF1 7012 100 - 1
GGCUUUGUCUGCUUGUGGCGUUUCGUGUCAGCACGAAAGACAA-----GCCACAGAAAAAGAGCGCAAAGGCAAAGUAGGAACAACA-------GCAGC---AGCCACAAGCCAC
(((((((.(((((((((((.(((((((....))))))).....-----))))))........((((....))...((....))....-------)))))---)).)).))))).. ( -35.50)
>DroPer_CAF1 7053 100 - 1
GGCUUUGUCUGCUUGUGGCGUUUCGUGUCAGCACGAAAGACAA-----GCCACAGAAAAAGAGCGCAAAGGCAAAGUAGGAACAACA-------GCAGC---AGCCACAAGCCAC
(((((((.(((((((((((.(((((((....))))))).....-----))))))........((((....))...((....))....-------)))))---)).)).))))).. ( -35.50)
>consensus
GGCUUUGUCUGCUUGUGGCGUUUCGUGUCAGCACGAAAGACAA_____GCCACAGAAAAAGAGCGCAAAGGCAAAGUAGGAACAACA_______GCAGC___AGCCACAAGCCAC
..........(((((((((.(((((((....)))))))........................((((............................)).))....)))))))))... (-16.86 = -18.76 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:51 2006