| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,899,330 – 13,899,444 |
| Length | 114 |
| Max. P | 0.945537 |
| Location | 13,899,330 – 13,899,444 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.96 |
| Mean single sequence MFE | -28.36 |
| Consensus MFE | -10.77 |
| Energy contribution | -11.05 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.945537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13899330 114 + 20766785 CAGCAGCUAUCAAUCAAUCGCUCUCAUCUCAUAUGGCACUUGAUUCACUCCUA------GAUCCGACUAUCUGCUAUAUAAGAUCGGUUUCCCUUAAUCGAGAGCAUCAGUUGUAGUUGA ...((((((.((((..((.((((((((((.((((((((.(((..((.......------))..))).....)))))))).)))).((((......))))))))))))..)))))))))). ( -31.70) >DroSec_CAF1 185277 110 + 1 CAGCAGCUAUC----AAUCGCUCUCAUCUUAUAUUGCACUUGAUUCAUUUCGA------GAUCCGACUAUAUGCUAUAUAAGAUCGGGUUCCGUUAAUCGAGAGCAUCAGUUGUAGUUGA ...((((((.(----(((.(((((((((((((((.((((((((......))))------)...........))).)))))))))(((...)))......))))))....)))))))))). ( -32.20) >DroSim_CAF1 188386 110 + 1 CAGGUGCUAUC----AAUCGCUCUCAUCUCAUAUUGCACUUGAUUCAUUUCGA------GAUCCGACUAUAUGCUAUAUAAGAUCUGGUUCCGUUAAUCGAGAGCAUCAGUUGUAGCUGA (((.(((.((.----.((.((((((((((.((((.((((((((......))))------)...........))).)))).))))..((((.....))))))))))))..)).))).))). ( -26.40) >DroEre_CAF1 185469 106 + 1 ----G--UCAUUGUCAAU-GCUCUCAUCUCCUAUUUUACUUG-GUUACUCUGA------GAUCCGAUAAUCGGCUAUAUAAGAAAUGGUUCCGUAAAUCGAGAGCAUCAGUAGUAGAUGA ----(--(((((((..((-((((((.............((..-(.....)..)------)....(((...(((((((.......))))..)))...)))))))))))..))))).))).. ( -23.40) >DroYak_CAF1 197585 119 + 1 CAUAGUCUCUCAAUCAAU-GCUCUCAUUUCCUACUGCACUUGAGUCACUCCGAUUCUCCGAUUUUACUAUCGACUAUAUAAGAUCUGGUUCCGUAGAUCGAGAGCAUCAGUUAUAGAUGU ....((((...(((..((-((((((................(((((.....)))))..((((......)))).........((((((......))))))))))))))..)))..)))).. ( -28.10) >consensus CAGCAGCUAUC__UCAAUCGCUCUCAUCUCAUAUUGCACUUGAUUCACUCCGA______GAUCCGACUAUCUGCUAUAUAAGAUCUGGUUCCGUUAAUCGAGAGCAUCAGUUGUAGAUGA ...................((((((..................................((((..................)))).((((.....))))))))))............... (-10.77 = -11.05 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:43 2006