Locus 4218

Sequence ID	2R_DroMel_CAF1
Location	13,857,960 – 13,858,052
Length	92
Max. P	0.565167

overview

Window 4

Location	13,857,960 – 13,858,052
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	83.02
Mean single sequence MFE	-17.36
Consensus MFE	-11.58
Energy contribution	-11.34
Covariance contribution	-0.24
Combinations/Pair	1.06
Mean z-score	-1.70
Structure conservation index	0.67
SVM decision value	0.06
SVM RNA-class probability	0.565167
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13857960 92 + 20766785
AUUUAAUUAUGAAAGAAGCAUAAGUACAGUCUAAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC
......(((((.......)))))(((.(((((.(((...((((((....((((....))))..))))))....))).))))).)))...... ( -20.30)
>DroSec_CAF1 158169 81 + 1
AUUUAAUUAUGAAAUAAGCAU-----------AAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC
.................((..-----------.......((((((....((((....))))..))))))(((...........))).))... ( -12.70)
>DroSim_CAF1 163395 92 + 1
AUUUAAUAAUGAAAGUAGCAUGAGUGCAGUCUAAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC
.................((.((...(.(((((.(((...((((((....((((....))))..))))))....))).))))))..))))... ( -19.00)
>DroEre_CAF1 158929 85 + 1
AAGUGACUUUGAAAUAAGUAUA-------UCUGAAUUGUUUUCAGUGUAUUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC
..((.((((......))))...-------(((....(((((((((.((((.((....))))))))))))))).....))).......))... ( -17.00)
>DroYak_CAF1 163622 80 + 1
AAGAGACUAUAAAAUAAGUAC------------AAUUGUUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC
.(((((((........)))..------------...(((((((((....((((....))))..)))))))))........))))........ ( -17.80)
>consensus
AUUUAAUUAUGAAAUAAGCAU________UCUAAAUUUAUUUCAGUGUAAUGCUGAUGCAUAUCUGAAAGCAUAUUAAGACUCUGCAGCAAC
.................((....................((((((.(((.(((....))))))))))))(((...........))).))... (-11.58 = -11.34 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:30 2006