Locus 4217

Sequence ID 2R_DroMel_CAF1
Location 13,857,007 – 13,857,127
Length 120
Max. P 0.977253
window6773

overview

Window 3

Location 13,857,007 – 13,857,127
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.57
Mean single sequence MFE -28.10
Consensus MFE -22.60
Energy contribution -21.24
Covariance contribution -1.36
Combinations/Pair 1.27
Mean z-score -2.29
Structure conservation index 0.80
SVM decision value 1.79
SVM RNA-class probability 0.977253
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13857007 120 - 20766785
UCCUACUCGAUAAGUUAUAUUACUUUAUGUGUUUAUCUGAGUGCAUUCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGACUUCGAUAGAAAUCAACCGAGUAAUUAAA
...((((((..((((......))))..((..((((((.((((.((((.((((((((((((............)))))))).)))).)))))))).))))))...))..))))))...... ( -29.50)
>DroSec_CAF1 157196 120 - 1
GCCUACUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAA
...((((((..((((((((.((.(((((...(((((((..((((......)))))))))))......))))).))..))))))))...(((((((....)))))))..))))))...... ( -28.90)
>DroSim_CAF1 162486 120 - 1
GCCCACUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGGAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCAGCCGGGUAAUUAAA
((((((((((.....(((((......))))).....)))))).......(((.......(((((((....((....)).)))))))..(((((((....))))))))))))))....... ( -32.30)
>DroEre_CAF1 158024 117 - 1
GCACACUUGAUA-GUU--AUUGUUUUAUGUGUUUAUUUAAGUGUAUCCAAGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGGAAUCACCCAAGUAAUUAAA
..((((((((((-(.(--((........))).))).))))))))....((((((((((((............)))))))).))))...(((((((....))))))).............. ( -21.60)
>DroYak_CAF1 162693 117 - 1
GCCUACUUGAUACGUU--AUGGUUUUAUGUGCUUAUUUAAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUGGCUUCAAUGAUUUCGAUAUGAAUCAGUCAAGUAAUUA-A
...((((((((.....--.(((....(((..(((....)))..))))))(.(((((((((............))))))))).).....((((((......))))))))))))))....-. ( -28.20)
>consensus
GCCUACUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAA
....(((((.................(((..(((....)))..)))..((((((((((((............)))))))).))))...(((((((....)))))))..)))))....... (-22.60 = -21.24 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:29 2006