Locus 4209

Sequence ID 2R_DroMel_CAF1
Location 13,834,568 – 13,834,659
Length 91
Max. P 0.906976
window6765

overview

Window 5

Location 13,834,568 – 13,834,659
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 85.67
Mean single sequence MFE -18.98
Consensus MFE -14.56
Energy contribution -14.92
Covariance contribution 0.36
Combinations/Pair 1.07
Mean z-score -3.46
Structure conservation index 0.77
SVM decision value 1.05
SVM RNA-class probability 0.906976
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13834568 91 + 20766785
GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUACAUACAUAUACAUGCAAUAAAUUUGCUAAAUGAA
((((((((((((........)))))).....)))))-).................................((((.....))))........ ( -18.00)
>DroSec_CAF1 135031 87 + 1
GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACACAUACAU----AUACAUGCAAUAAAUUUGCUAAAUGAA
((((((((((((........)))))).....)))))-).......................----......((((.....))))........ ( -18.00)
>DroSim_CAF1 140272 89 + 1
GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUACAUAC--AUACAUGCAAUAAAUUUGCUAAAUGAA
((((((((((((........)))))).....)))))-)........................(--((....((((.....))))...))).. ( -18.90)
>DroEre_CAF1 135718 81 + 1
GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUA----------CAUGCAAUAAAUUUGCUAAAUGAA
((((((((((((........)))))).....)))))-)....................----------...((((.....))))........ ( -18.00)
>DroWil_CAF1 162410 79 + 1
GCUGUUUCAUGCUUCAUGGCGCAUGAAAUGCAACAGUCCAGCGCAACAACAAAAUGU---UGC--AUAAAUG----AAAUCUGUUUC----A
((.(((((((((........)))))))))))(((((..((..((((((......)))---)))--.....))----....)))))..----. ( -22.10)
>DroYak_CAF1 139807 85 + 1
GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG-CAACCGAAACAACAACAUAUACAU------ACAUGCAAUAAAUUUGCUAAAUGAA
((((((((((((........)))))).....)))))-)....................(((------....((((.....))))...))).. ( -18.90)
>consensus
GCUGUUUCAUGCUUCACGAUGCAUGAAAUGCAACAG_CAACCGAAACAACAACAUAUACAU____AUACAUGCAAUAAAUUUGCUAAAUGAA
((.(((((((((........)))))))))))........................................((((.....))))........ (-14.56 = -14.92 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:21 2006