Locus 4207

Sequence ID 2R_DroMel_CAF1
Location 13,831,480 – 13,831,573
Length 93
Max. P 0.971878
window6763

overview

Window 3

Location 13,831,480 – 13,831,573
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 94.49
Mean single sequence MFE -8.96
Consensus MFE -8.80
Energy contribution -8.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.19
Structure conservation index 0.98
SVM decision value 1.68
SVM RNA-class probability 0.971878
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13831480 93 + 20766785
-AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU-------
-.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- (  -8.80)
>DroSec_CAF1 132021 93 + 1
-AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU-------
-.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- (  -8.80)
>DroSim_CAF1 137225 93 + 1
-AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU-------
-.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- (  -8.80)
>DroEre_CAF1 132590 93 + 1
-AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUGUCCAU-------
-.........((((..........(((((.(((..((((((((...))))))))..)))...........)))))..........)))).....------- (  -9.55)
>DroYak_CAF1 136757 93 + 1
-AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCUAU-------
-.......................(((((.(((..((((((((...))))))))..)))...........)))))...................------- (  -8.80)
>DroAna_CAF1 140189 101 + 1
CAACCCAACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCGAGCUAGCACAU
..............(((.(((((((((((.....)))).)))))(((((((....((((............))))..))))))).....))..)))..... (  -9.00)
>consensus
_AACCGCACCCAAUCUAAUCAAUUUUGCAUAUACUGCACAAAUUAUAUUUGUGUUUUGUCCACUCCAUUUUGCAAUUCAAAUAUUAUUCUCGAU_______
........................(((((.(((..((((((((...))))))))..)))...........))))).......................... ( -8.80 =  -8.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:19 2006