Locus 4204

Sequence ID 2R_DroMel_CAF1
Location 13,819,399 – 13,819,496
Length 97
Max. P 0.637862
window6758

overview

Window 8

Location 13,819,399 – 13,819,496
Length 97
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -11.10
Consensus MFE -6.96
Energy contribution -7.76
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.63
SVM decision value 0.22
SVM RNA-class probability 0.637862
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13819399 97 - 20766785
AUUUUGAUUAAUCCCAUA--UAUAGUUGA---UUAAAACUAUUGAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU-UCCCUCAACC
..(((((((......(((--((((((..(---(.......))..)...)))))))).....((.((((........)))).)))))))))..-.......... ( -11.30)
>DroSec_CAF1 119835 91 - 1
A------UUAAUCUCAUA--UAUAGUUGA---UUAAAACUAUAAAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU-UCCCUCAACC
.------...........--(((((((..---....)))))))...............(((((.((((........)))).)))))......-.......... ( -10.50)
>DroSim_CAF1 125235 91 - 1
A------UUUAUCUCAUA--UAUAGUUGA---AUAAAACUAUAAAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU-UCCCUCAACC
.------...........--(((((((..---....)))))))...............(((((.((((........)))).)))))......-.......... ( -10.50)
>DroEre_CAF1 120285 91 - 1
A------UGU--AUCUUGAUUACUGUUGA---UAAAAACUAUAUGGAACUAUAUAUUUAUUUGCUGUGUACGAAAUCACACCAAGUCAAGCU-UCCCUCUUCC
.------...--..(((((((...((.((---((((...((((((....)))))))))))).))((((........))))...)))))))..-.......... ( -12.90)
>DroYak_CAF1 124508 89 - 1
------------AUCUUA--UACAGUUGAAAACAAAAACUAUAUAAAACUAUACAUAUAUUUGCUGUGUAUCAAAUCACACCAAGUCAAGUUUUCCCUCUUCC
------------......--.......((((((........((((....)))).....(((((.((((........)))).)))))...))))))........ ( -10.30)
>consensus
A______UUAAUCUCAUA__UAUAGUUGA___UUAAAACUAUAAAAAUCUAUAUAUUUAUUUGCUGUGCAUCAAAUCACACCAAGUCAAGCU_UCCCUCAACC
....................(((((((.........)))))))...............(((((.((((........)))).)))))................. ( -6.96 =  -7.76 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:15 2006