Locus 4198

Sequence ID 2R_DroMel_CAF1
Location 13,806,016 – 13,806,119
Length 103
Max. P 0.963822
window6751

overview

Window 1

Location 13,806,016 – 13,806,119
Length 103
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.54
Mean single sequence MFE -30.34
Consensus MFE -24.38
Energy contribution -25.22
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -2.14
Structure conservation index 0.80
SVM decision value 1.56
SVM RNA-class probability 0.963822
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13806016 103 - 20766785
UCCGAGUGAAGGGGGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGUCUGGGCUUAAAAACCUCGCAUUUGGAUG-----AGAUUAAAU
((((((((..((((.((((.((((((.(-(.....)).))))))))))........(((((((......)))))))....)))).))))))))..-----......... ( -32.60)
>DroSec_CAF1 106726 102 - 1
UCCGAGUGAAGGGGGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGCCUGGGCUUAAAAA-CUCGCAUUCGGAUG-----AGAUUAAAU
((((((((..(((..((((.((((((.(-(.....)).))))))))))..).....(((((((......)))))))....-))..))))))))..-----......... ( -33.10)
>DroSim_CAF1 110541 102 - 1
UCCGAGUGAAGGGGGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGUCUGGGCUUAAAAA-CUCGCAUUUGGAUG-----AGAUUAAAU
((((((((..(((..((((.((((((.(-(.....)).))))))))))..).....(((((((......)))))))....-))..))))))))..-----......... ( -31.00)
>DroEre_CAF1 107070 101 - 1
UCCGAGUGAAGG-GGCUCAGUGGCGAAU-AAAAGAUGAUUGCCAUGGGAACUGGAAAGCGCUCUUGUCCGGGCUCAAAAA-CUCGCAUUUGGAUG-----AGAUUAAAU
((((((((...(-(((((.(((((((.(-(.....)).))))))).(((...(((......)))..))))))))).....-....))))))))..-----......... ( -29.60)
>DroYak_CAF1 111301 97 - 1
UCCGAGUGAAGG-GGCUCAGUGGCGAAUGAAAAGAUGAUUGCCAUGGGAAC----------UCUUGUCUGGGCUUAAAAA-CUCGCAUUUGGAUGAGAUGAGAUUAAAU
..(((((....(-(((((((.(((((............)))))(..((...----------.))..)))))))))....)-))))(((((.....)))))......... ( -25.40)
>consensus
UCCGAGUGAAGGGGGCUCAGUGGCGAAU_AAAAGAUGAUUGCCAUGGGAACUGAAAUGGGCUCUUGUCUGGGCUUAAAAA_CUCGCAUUUGGAUG_____AGAUUAAAU
((((((((..((((((((((((((((............)))))).(((..(......)..)))....))))))))......))..))))))))................ (-24.38 = -25.22 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:08 2006