Locus 4192

Sequence ID 2R_DroMel_CAF1
Location 13,797,656 – 13,797,767
Length 111
Max. P 0.695465
window6740

overview

Window 0

Location 13,797,656 – 13,797,767
Length 111
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.42
Mean single sequence MFE -50.03
Consensus MFE -15.10
Energy contribution -15.85
Covariance contribution 0.75
Combinations/Pair 1.11
Mean z-score -2.46
Structure conservation index 0.30
SVM decision value 0.34
SVM RNA-class probability 0.695465
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13797656 111 - 20766785
GCUGGACAAGUCAGUCGGCCAGGCGGUGACGGCAAAGCACAUCGAAUUGAUGGGCAAGAAGCCGACGGAAGUGGGCGUUGGUGU------UCCGCCACCACCAGCUCCCAAUAUGUA
(((((....(((....)))..(((((.((((.(((.((.((((.....)))).)).....(((.((....)).))).))).)))------))))))....)))))............ ( -44.20)
>DroVir_CAF1 120820 93 - 1
GCUGGACAAGUCG------CAGC------CGGGCAAGCACAUUGAGCUGCUGGCCAAGAAGCCCAGCGAGGUGGGCG------U------GCCGGCAGCGCCCACGCCCAAUAUACC
((((((....)).------))))------.((((.(((.......)))(((((.(.....).)))))...(((((((------(------.......))))))))))))........ ( -40.70)
>DroPse_CAF1 95786 102 - 1
GCUGGACAAGUCGGUUGGGCAAC------CGGCCAAGCACAUCGAGCUGCUCGGCAAGAAGCCCCCCGAGGUGGGCGUG---GU------GCCGGCAGCUCCCACACCCAGCAUGCC
(((((.......((((((....)------))))).........(((((((.(((((....((((((...)).))))...---.)------)))))))))))......)))))..... ( -55.30)
>DroSim_CAF1 102328 111 - 1
GCUGGACAAGUCAGUCGGCCAGGCGGUGACGGCGAAGCACAUCGAAUUGAUGGGCAAGAAGCCGACCGAAGUGGGCGUUGGUGU------UCCGCCAGCCCCCGCACCCAACAUGUA
(.(((.....((.((((((..(.((....)).)...((.((((.....)))).)).....)))))).)).(((((.(((((((.------..))))))).)))))..))).)..... ( -46.20)
>DroAna_CAF1 107244 117 - 1
GCUGGACAAGUCGGUCGGGCAGGCGGCGGCGGCCAAGCACAUCGAGCUGCUGGGCAAGAAGCCGCCGGAGGUGGGCGUUGGUGUUGGAGUGCCUCCGGCCCCAGCUCCCAACAUGUA
(((.(((......))).)))...(((((((.(((.((((........)))).))).....)))))))..(.((((.(((((.(((((((...))))))).))))).)))).)..... ( -58.50)
>DroPer_CAF1 96653 102 - 1
GCUGGACAAGUCGGUUGGGCAAC------CGGCCAAGCACAUCGAGCUGCUCGGCAAGAAGCCCCCCGAGGUGGGCGUG---GU------GCCGGCAGCUCCCACACCCAGCAUGCC
(((((.......((((((....)------))))).........(((((((.(((((....((((((...)).))))...---.)------)))))))))))......)))))..... ( -55.30)
>consensus
GCUGGACAAGUCGGUCGGGCAGC______CGGCCAAGCACAUCGAGCUGCUGGGCAAGAAGCCCACCGAGGUGGGCGUU___GU______GCCGCCAGCCCCCACACCCAACAUGCA
((((((....))....((.............(((.((((........)))).))).....(((..........)))...............))..)))).................. (-15.10 = -15.85 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:58 2006