Locus 4191

Sequence ID 2R_DroMel_CAF1
Location 13,797,114 – 13,797,234
Length 120
Max. P 0.688215
window6738 window6739

overview

Window 8

Location 13,797,114 – 13,797,234
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -57.83
Consensus MFE -32.29
Energy contribution -30.60
Covariance contribution -1.69
Combinations/Pair 1.40
Mean z-score -2.08
Structure conservation index 0.56
SVM decision value 0.14
SVM RNA-class probability 0.603298
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13797114 120 + 20766785
GAUAGAAGUGGGGCAUGCCCUUGCCCGGUCCAGGACCACCUAGACCGGCUGCUCCCAAAGCCGAGAGACCACCCAAACCGGGUGGCAGGCUUCCUGGCGGCGGCCCAGCCACUGCACUUA
.....((((((((((......)))))((((.(((....))).))))(((((((.((((((((....(.((((((.....))))))).)))))..))).))))))).........))))). ( -58.10)
>DroPse_CAF1 95205 120 + 1
GAUAGAAGUGGGGCAUGCCUUUUCCGGGCGUUGGACCGCCCAGGGCGGCAGCACCCAGUGCCGAGAGGCCCCCCAGGCCGGGAGGCAGGGCUCCAGGCGGCGGGCCAGUCACGGCACUGA
.........(((((.((((...((((((((......))))).))).)))))).)))(((((((.(((((((.((..(((.((((......)))).))))).)))))..)).))))))).. ( -64.40)
>DroWil_CAF1 121227 120 + 1
GAUAAAAGUGGGGUAUUCCCUUUCCUGGACCUGGACCAGCCAAGCCGGCUGCUCCAAGUGCCGAAAGGCCUCCCAGUCCGGGUGGCAGGGAUCCAGGCGGAGGACCGGCCACUGCACUGA
......((((.(((..(((((..(((((((.((((.(((((.....))))).))))((.(((....)))))....)))))))....)))))....(((((....)).)))))).)))).. ( -55.30)
>DroYak_CAF1 102522 120 + 1
GAUAGAAGUGGGGCAUGCCUUUACCCGGUCCAGGACCACCUAGACCAGCUGCUCCCAAAGCGGAGAGACCACCCAAACCGGGUGGCAGGGUUCCAGGCGGCGGCCCAGCCACCGCACUGA
......((((.((...((((..((((((((.(((....))).))))..(((((.....)))))...(.((((((.....))))))).))))...))))(((......))).)).)))).. ( -53.10)
>DroAna_CAF1 106690 120 + 1
GAUAGUAGUGCGGCAAGCCCUUGCCCGGUCCAGGACCUCCCAGACCGGCUGCACCCAGCGCUGAAAUCCCGCCCAGACCCGGCGGCAGGGCUCCUGGCGGCGGACCAGCCACUGCACUGA
....((((((((((((....))))).(((((.((.....))......(((((....(((.(((.....(((((.......)))))))).)))....)))))))))).).))))))..... ( -51.70)
>DroPer_CAF1 96066 120 + 1
GAUAGAAGUGGGGCAUGCCUUUUCCGGGCGUUGGACCGCCCAGGGCGGCAGCACCCAGUGCCGAGAGGCCCCCCAGGCCGGGAGGCAGGGCUCCAGGCGGCGGGCCAGUCACGGCACUGA
.........(((((.((((...((((((((......))))).))).)))))).)))(((((((.(((((((.((..(((.((((......)))).))))).)))))..)).))))))).. ( -64.40)
>consensus
GAUAGAAGUGGGGCAUGCCCUUUCCCGGUCCAGGACCACCCAGACCGGCUGCACCCAGUGCCGAGAGGCCACCCAGACCGGGUGGCAGGGCUCCAGGCGGCGGACCAGCCACUGCACUGA
......((((.((...(((((((((.(((...((.....))....(((((........))))).............))).))))..))))).)).(((((....)).)))....)))).. (-32.29 = -30.60 +  -1.69)

alignment

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secondary structure

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dotplot

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Window 9

Location 13,797,114 – 13,797,234
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -61.82
Consensus MFE -32.39
Energy contribution -33.28
Covariance contribution 0.89
Combinations/Pair 1.24
Mean z-score -2.43
Structure conservation index 0.52
SVM decision value 0.32
SVM RNA-class probability 0.688215
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13797114 120 - 20766785
UAAGUGCAGUGGCUGGGCCGCCGCCAGGAAGCCUGCCACCCGGUUUGGGUGGUCUCUCGGCUUUGGGAGCAGCCGGUCUAGGUGGUCCUGGACCGGGCAAGGGCAUGCCCCACUUCUAUC
...(.((.(((((...))))).)))..((((((.(((((((.....))))))).....))))))(((.(((.((((((((((....))))))))))((....)).))))))......... ( -58.10)
>DroPse_CAF1 95205 120 - 1
UCAGUGCCGUGACUGGCCCGCCGCCUGGAGCCCUGCCUCCCGGCCUGGGGGGCCUCUCGGCACUGGGUGCUGCCGCCCUGGGCGGUCCAACGCCCGGAAAAGGCAUGCCCCACUUCUAUC
..(((((((.((..(((((.(((((.((((......)))).)))..)).))))))).)))))))(((.((((((...(((((((......)))))))....)))).)))))......... ( -69.90)
>DroWil_CAF1 121227 120 - 1
UCAGUGCAGUGGCCGGUCCUCCGCCUGGAUCCCUGCCACCCGGACUGGGAGGCCUUUCGGCACUUGGAGCAGCCGGCUUGGCUGGUCCAGGUCCAGGAAAGGGAAUACCCCACUUUUAUC
.......(((((..(((..(((.((((((((((..((....))...)))).(((....))).((((((.(((((.....))))).))))))))))))....)))..))))))))...... ( -53.50)
>DroYak_CAF1 102522 120 - 1
UCAGUGCGGUGGCUGGGCCGCCGCCUGGAACCCUGCCACCCGGUUUGGGUGGUCUCUCCGCUUUGGGAGCAGCUGGUCUAGGUGGUCCUGGACCGGGUAAAGGCAUGCCCCACUUCUAUC
((((.((((((((...))))))))))))......(((((((.....)))))))..........((((.(((.((((((((((....))))))))))((....)).)))))))........ ( -57.90)
>DroAna_CAF1 106690 120 - 1
UCAGUGCAGUGGCUGGUCCGCCGCCAGGAGCCCUGCCGCCGGGUCUGGGCGGGAUUUCAGCGCUGGGUGCAGCCGGUCUGGGAGGUCCUGGACCGGGCAAGGGCUUGCCGCACUACUAUC
.((((((..((((.((....))))))(((..((((((..........))))))..))).))))))(((((...(((((..((....))..)))))(((((....))))))))))...... ( -61.60)
>DroPer_CAF1 96066 120 - 1
UCAGUGCCGUGACUGGCCCGCCGCCUGGAGCCCUGCCUCCCGGCCUGGGGGGCCUCUCGGCACUGGGUGCUGCCGCCCUGGGCGGUCCAACGCCCGGAAAAGGCAUGCCCCACUUCUAUC
..(((((((.((..(((((.(((((.((((......)))).)))..)).))))))).)))))))(((.((((((...(((((((......)))))))....)))).)))))......... ( -69.90)
>consensus
UCAGUGCAGUGGCUGGCCCGCCGCCUGGAGCCCUGCCACCCGGUCUGGGGGGCCUCUCGGCACUGGGAGCAGCCGGCCUGGGUGGUCCAGGACCGGGAAAAGGCAUGCCCCACUUCUAUC
..((((..(((.((...((....((((((.(((((((((((.....)))))))....(((((........)))))....))).).))))))....))...)).)))....))))...... (-32.39 = -33.28 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:57 2006