| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,458,579 – 2,458,718 |
| Length | 139 |
| Max. P | 0.983778 |
| Location | 2,458,579 – 2,458,678 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.93 |
| Mean single sequence MFE | -21.78 |
| Consensus MFE | -18.10 |
| Energy contribution | -18.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2458579 99 + 20766785 AUUUUUAAUAAAACUAUUUUCUAAAUAUAAA---------------------AAAGAAAAUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGA ...............(((((((.........---------------------..)))))))..((....((((((.......))))))....((((((.....)))))).))........ ( -20.10) >DroSec_CAF1 20663 111 + 1 AUUUUCCAUAAAACUAAUUUCAUAAUAUAAAAUGAAUAAGA---------AAAAAUAAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGA ..............((((((((.................((---------((.......))))......((((((.......))))))....))))))))(((((.....)))))..... ( -21.60) >DroSim_CAF1 21025 111 + 1 AUUUUCCAUAAAACUAACUUCAUAAUAUAAAAUGAAUAGGA---------AAAAAUAAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGA .((((((.((....))..(((((........)))))..)))---------)))....(((((((.....((((((.......))))))....))))))).(((((.....)))))..... ( -23.10) >DroYak_CAF1 19866 111 + 1 AUUUUUAAUAAAAUAAU------A-AAGAA-UAAGCUAAUAAGCUAGAAAAAAAAU-CGUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGA .................------.-.(((.-..((((....)))).((((......-..))))((....((((((.......))))))....((((((.....)))))).)))))..... ( -22.30) >consensus AUUUUCAAUAAAACUAAUUUCAUAAUAUAAAAUGAAUAAGA_________AAAAAUAAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGA ...............................................................((....((((((.......))))))....((((((.....)))))).))........ (-18.10 = -18.10 + -0.00)
| Location | 2,458,610 – 2,458,718 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.82 |
| Mean single sequence MFE | -33.66 |
| Consensus MFE | -31.50 |
| Energy contribution | -31.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.983778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2458610 108 + 20766785 ------------AAAGAAAAUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUGUGAAGAUCGCCGAUAAAAGC ------------.........((((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....(((.....))).))....... ( -32.80) >DroSec_CAF1 20703 111 + 1 A---------AAAAAUAAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUGUGAAGAUCGCCGAUAAAAGC .---------...........((((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....(((.....))).))....... ( -32.80) >DroSim_CAF1 21065 111 + 1 A---------AAAAAUAAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUGUCAAGAUCGCCGAUAAAAGC .---------.............((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))..(((((.........))))).... ( -32.70) >DroEre_CAF1 20421 100 + 1 A---------AAAAAU-UGUCUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUG----------CGAUAAAAGC .---------....((-(((...((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....)----------))))...... ( -32.90) >DroYak_CAF1 19898 119 + 1 AAGCUAGAAAAAAAAU-CGUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUGAGAUGAUCGCCGAUAAAAGC ..(((.........((-((((((((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....))))))))..........))) ( -37.11) >consensus A_________AAAAAUAAAUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCACUUGUGAAGAUCGCCGAUAAAAGC .......................((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))......................... (-31.50 = -31.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:08 2006