| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,796,249 – 13,796,339 |
| Length | 90 |
| Max. P | 0.528472 |
| Location | 13,796,249 – 13,796,339 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.12 |
| Mean single sequence MFE | -39.68 |
| Consensus MFE | -28.16 |
| Energy contribution | -28.55 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13796249 90 + 20766785 UCCCAUGCCAGGCUCAUCCUUGUGCAUCAUGCCGGGAUGCGGUGGAAGACCACC------------ACUGGCAGCGUUUUGAGCUGCUGCGGCUGCUGC------UGC ......(((((...((((((.(.((.....))))))))).(((((....)))))------------.)))))(((.......)))...(((((....))------))) ( -35.40) >DroSec_CAF1 97049 90 + 1 UCCCAUGCCGGGCUCAUCCUUGUGCAUCAUGCCGGGAUGAGGUGGAAGACCUCC------------ACUGGCAGCGUUUUGAGCUGCCGCGGCAGCAGC------UAC .....(((((..((((((((.(.((.....)))))))))))(((((.....)))------------)).((((((.......)))))).))))).....------... ( -40.40) >DroSim_CAF1 100926 90 + 1 UCCCAUGCCGGGCUCAUCCUUGUGCAUCAUGCCAGGAUGAGGUGGAAGACCUCC------------ACUGGCAGCGUUUUGAGCUGCCGCGGCAGCAGC------UAC .....(((((..((((((((.(.((.....)))))))))))(((((.....)))------------)).((((((.......)))))).))))).....------... ( -41.10) >DroEre_CAF1 97460 90 + 1 UCCCAUGCCGGGUUCAUCCUUGUGCAUCAUGCCGGGAUGGGGUGGAAGACCUCC------------ACUGGCAGCGUUUUGAGCUGCCGCAGCAGCAGC------GAC .(((((.((((((.((....)).))......)))).)))))(((((.....)))------------)).((((((.......))))))((....))...------... ( -35.50) >DroYak_CAF1 101707 90 + 1 UCCCAUGCCGGGCUCAUCCUUGUGCAUCAUGCCGGGAUGAGGUGGAAGACCUCC------------GCUGGCAGCAUUUUGAGCUGCCGCAGCAGCAGC------GGC ......((((..((((((((.(.((.....)))))))))))(((((.....)))------------)).((((((.......))))))((....))..)------))) ( -37.50) >DroPer_CAF1 95251 108 + 1 GCUGAGAUUCGACUCAUCCUUGUGCAGCAUGCCGGGAUGAGGCGGAAGCCCUCCAGGGCCCCCGCCACUGGCAGCAUUCUGAGCGGCCGCAGCAGCAGCAGCAGCGGC (((.(((...(.(.((....)).)).((.((((((.....(((((..((((....))))..))))).))))))))..))).))).(((((.((.......)).))))) ( -48.20) >consensus UCCCAUGCCGGGCUCAUCCUUGUGCAUCAUGCCGGGAUGAGGUGGAAGACCUCC____________ACUGGCAGCGUUUUGAGCUGCCGCAGCAGCAGC______GAC .....((((((.((((((((.(.((.....)))))))))))..(((.....))).............)))))).........(((((....)))))............ (-28.16 = -28.55 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:54 2006