| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,767,965 – 13,768,062 |
| Length | 97 |
| Max. P | 0.513339 |
| Location | 13,767,965 – 13,768,062 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.58 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -18.46 |
| Energy contribution | -18.55 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13767965 97 + 20766785 UUUGGCCAAUCACGGCAGCCAAUCGCCGUUUCGAGUGUGCAAAAUCGCGGCCAUGCAAAACACGCUGGCGG---AAGGCUUAAUUAUGCACUUGCAAC--UU----- ..(((((....(((((........))))).....(((........))))))))(((((..........(..---..)((........))..)))))..--..----- ( -26.10) >DroVir_CAF1 82382 103 + 1 UGCCACCAAUCACUGCAGCCAAUCGCCGUUGCAAGUGUGCUAAAUCGCGGCCAUGCAAAACAUGCUGGCC----AAGGCUUAAUUAUGCACUCGCAGUGUUUGCUGC .(((......(((((((((........))))).)))).((......))(((((.(((.....))))))))----..)))..............(((((....))))) ( -33.30) >DroSec_CAF1 68966 91 + 1 UUUGGCCAAUCACGGCAGCCAAUCGCCGUUUCGAGUGUGCAAAAUCGCGGCCAUGCAAAACACGCUGGCGG---AAGGCUUAAUUAUGCACUUG------------- ..(((((....(((((........))))).....(((........))))))))((((.........(.(..---..).).......))))....------------- ( -24.19) >DroWil_CAF1 77325 105 + 1 -ACCGCCAAUCACGGCAGCCAAUCGCUGU-UCAAGUGUGCAAAAUCGCGGCCAUGCAAAACAUGCUGGUGGUGCAAGACUUAAUUAUGCACUUGCAGCAGUUGCAGU -...(((...(((.(((((.....)))))-....))).((......)))))..(((((....(((((..((((((.((.....)).))))))..))))).))))).. ( -34.30) >DroMoj_CAF1 97099 101 + 1 UGCCACCAAUCGCUGCAGCCAAUCGCGUUUGCAAGUGUGCUAAAUCGCGGCCAUGCAAAACAUGCUGGCC----ACGGCUUAAUUAUGCGCUAGCCGCUUUUUUU-- ...........((....((.....))....))(((((.((((...((.(((((.(((.....))))))))----.))((........))..))))))))).....-- ( -28.80) >DroAna_CAF1 75452 99 + 1 --CGGCCAAUCACGGCAGCCAAUCGCCGU-UCAAGUGUGCAAAAUCGCGGCCAUGCAAAACACGACGGUGU---AAGGCUUAAUUAUGCACUUGCAAC--GUCGUGU --.((((....(((((........)))))-....(((........))))))).......((((((((.(((---(((((........)).)))))).)--))))))) ( -40.70) >consensus UGCCGCCAAUCACGGCAGCCAAUCGCCGUUUCAAGUGUGCAAAAUCGCGGCCAUGCAAAACACGCUGGCGG___AAGGCUUAAUUAUGCACUUGCAGC__UU__U__ ...........(((((........)))))..(((((((((......)).((((.((.......))))))..................)))))))............. (-18.46 = -18.55 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:41 2006