Locus 418

Sequence ID 2R_DroMel_CAF1
Location 2,455,212 – 2,455,311
Length 99
Max. P 0.901353
window814

overview

Window 4

Location 2,455,212 – 2,455,311
Length 99
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 80.35
Mean single sequence MFE -21.93
Consensus MFE -13.81
Energy contribution -14.03
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -2.33
Structure conservation index 0.63
SVM decision value 1.02
SVM RNA-class probability 0.901353
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2455212 99 + 20766785
------------------CCUUUGCACACAACCAUAUGAAUAAUCUGCAUCCCAUAUGAGAACUAUUCCCAUAUGCUAUUAUAUUCCACCGUAUUUGGUUGUCAAAUUGCUUGAACU
------------------.....(((.(((((((((((..............((((((.((.....)).))))))..............))))..))))))).....)))....... ( -15.29)
>DroSec_CAF1 17281 111 + 1
CAAACUGGGAUUACUCCACACUUGCACACAAGCAUAUGAAUAGUCUGCAUCCCAUAUGGGAACUC------CAUGCUAUUAUAUUCCACCAUAUUUGGUUGUCAAAUUGCUUGAACU
.......(((....)))...........((((((..((((((((.((..((((....))))....------)).)))))........((((....))))..)))...)))))).... ( -23.50)
>DroSim_CAF1 17351 106 + 1
----UUGGGAUUACUCCACACUUGCACACAAGCAUAU-AAUAGUCUGCAUCCCAUAUGGGAACUC------CAUGCUAUUAUAUUCCACCAUAUUUGGUUGUCAAAUUGCUUGAACU
----.(((((....))).))........(((((((((-((((((.((..((((....))))....------)).)))))))))....((((....))))........)))))).... ( -27.00)
>consensus
_____UGGGAUUACUCCACACUUGCACACAAGCAUAUGAAUAGUCUGCAUCCCAUAUGGGAACUC______CAUGCUAUUAUAUUCCACCAUAUUUGGUUGUCAAAUUGCUUGAACU
............................((((((.....(((((..(((((((....))))............))).))))).....((((....))))........)))))).... (-13.81 = -14.03 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006