Locus 4179

Sequence ID 2R_DroMel_CAF1
Location 13,745,419 – 13,745,522
Length 103
Max. P 0.942051
window6719

overview

Window 9

Location 13,745,419 – 13,745,522
Length 103
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 92.66
Mean single sequence MFE -20.78
Consensus MFE -17.34
Energy contribution -17.02
Covariance contribution -0.32
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.83
SVM decision value 1.32
SVM RNA-class probability 0.942051
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13745419 103 + 20766785
UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCUUUUU---GUCUCCUCGGAAUAAUGAUGAUAAUCCUGAGGGGUCUGUUCUUCCACUCUAUUUCUCAC
.((((((((((........)))))))))).((((((......((---(((...(((......))).)))))....))))))......................... ( -21.60)
>DroSec_CAF1 46747 102 + 1
UGGGUAUUUCGUUUGUCUCUGAAAUACUCUUCCUUCUCCUUUUU---GUCUCCUCCGAAAAAUGAUGAUAAUCCUGAGGGGUCUGU-CUUCCUCUCUAUUUCUCAC
.((((((((((........))))))))))...............---.........((((...(((....)))..((((((.....-...))))))..)))).... ( -20.00)
>DroSim_CAF1 49506 102 + 1
UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCUUUUU---GUCUCCUCCGAAUAAUGAUGAUAAUCCUGAGGGGUCUGU-AUUCCUCUCUAUUUCUCAC
.((((((((((........)))))))))).((((((......((---(((..(..........)..)))))....)))))).....-................... ( -20.20)
>DroEre_CAF1 46648 102 + 1
UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCGAUUU---GUCUCCUCCGAAUAAUGAUGGUAAUCCUGAGGGGUCCGU-UUUCCUCUCUAUUUCUCAC
.((((((((((........))))))))))..((.((....((((---(.......)))))...)).)).......((((((.....-...)))))).......... ( -21.90)
>DroYak_CAF1 49065 105 + 1
UGGGUAUUUCGUUUGUCUCUGAAAUAUUCUCCCUUCGCCGCUUCACAGUCUCCUCCGAAUAACGAUGAUAAUCCUGAGGGGUCUGU-CUUCCUCUCUAUUUCUCAC
.((((((((((........))))))))))...............((((.((((((.(......(((....)))).)))))).))))-................... ( -20.20)
>consensus
UGGGUAUUUCGUUUGUCUCUGAAAUACUCUCCCUUCUCCUUUUU___GUCUCCUCCGAAUAAUGAUGAUAAUCCUGAGGGGUCUGU_CUUCCUCUCUAUUUCUCAC
.((((((((((........)))))))))).((((((............((......)).....(((....)))..))))))......................... (-17.34 = -17.02 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:38 2006