| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,731,971 – 13,732,087 |
| Length | 116 |
| Max. P | 0.819291 |
| Location | 13,731,971 – 13,732,087 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -23.27 |
| Energy contribution | -23.00 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.819291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13731971 116 + 20766785 ----UGUGUGCAACACGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUUGAAAAUCCGCAUCUGAUGUCGAUACAAGACCUCGAG ----.(((((...)))))(((((((.....)))))))..(((((.....)))))((((..(((((((((........)))).)))))...))))...(((.(((.......))).))).. ( -37.10) >DroPse_CAF1 30352 108 + 1 UGUGCCCGUGCAACAUGCGGCGCGUGAUUAAUGUGCCAAAUUGCAAAUUGCAGCACAGCGCCUAACUGUCAAUCAAAA-AGCUCCGAAAUCCGCACUCGACCUCGAC-----------AG .((((..((((.......(((((((.....)))))))....(((.....))))))).))))....(((((........-.((..........))....(....))))-----------)) ( -30.20) >DroEre_CAF1 32798 116 + 1 ----UGUGUGCAACACGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUCUGAAAUCCGCAUUUGAUGUCGAUACAAGACCUCGAG ----.(((((...)))))(((((((.....)))))))..(((((.....)))))((((..((((.((((........))))...))))..))))..((((.(((.......))).)))). ( -36.00) >DroYak_CAF1 35272 119 + 1 CGAGUGUGUGCAACAUGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUCUAAACUCCGCAUUUGAUGUCGAUACAAGACCUCGA- (((((((((((((..((((((((((.....))))))).....)))..))))(((((((.(((((.((((........))))...))))).)))))))........)))))....)))).- ( -40.00) >DroAna_CAF1 35372 116 + 1 ----UGUGUGCAACAUGCGGCGUAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAUCUGUCAAUCAAAGCAGCUCUAAAAUUCGCAUUUGCUGUCCAUGUGAGACCUCGAC ----...((...(((((.(((...((((..(((((((..(((((.....)))))..))))..)))..)))).....((((((..........))...))))))))))))...))...... ( -25.30) >DroPer_CAF1 30398 108 + 1 UGUGCCUGUGCAACAUGCGGCGCGUGAUUAAUGUGCCAAAUUGCAAAUUGCAGCACAGCGCCUAACUGUCAAUCAAAA-AGCUCCGAAAUCCGCACUCGACCUCGAC-----------AG .((((.(((((.......(((((((.....)))))))....(((.....))))))))))))....(((((........-.((..........))....(....))))-----------)) ( -32.30) >consensus ____UGUGUGCAACAUGCGGCACAUGAUUAAUGUGCCAAAUUGCAAAUUGCAGUGCGGCGUUUAACUGUCAAUCAAAGCAGCUCUAAAAUCCGCAUUUGAUGUCGAUACAAGACCUCGAG .......((((...(((((((((((.....)))))))..(((((.....)))))...))))....((((........))))...........))))........................ (-23.27 = -23.00 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:30 2006