Locus 4172

Sequence ID 2R_DroMel_CAF1
Location 13,731,728 – 13,731,829
Length 101
Max. P 0.787570
window6709

overview

Window 9

Location 13,731,728 – 13,731,829
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.89
Mean single sequence MFE -24.67
Consensus MFE -17.44
Energy contribution -16.83
Covariance contribution -0.61
Combinations/Pair 1.12
Mean z-score -2.02
Structure conservation index 0.71
SVM decision value 0.58
SVM RNA-class probability 0.787570
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13731728 101 + 20766785
-------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGCCG--GCAAAAAGUGAAUGUCACUUGCAAAUCAAAAACG----UUUU
-------------((.(((..((.((((..(((((.((((......)))).)))).......(((((((((...))--))))))))..)))))).)))))............----.... ( -23.20)
>DroPse_CAF1 30067 118 + 1
CUCCAAGGCCUUGCCCAGGGCAAACAUUUGCAAAUGUCAUAAUUACAUGAUAUUUGAUUAAAUUUUUGUCGAGCCACACAGAAAAGUGAAUGUCAUUUGCAAAUCAAA-CAA-CAUUAUU
.......(((((....)))))....(((((((((((.(((..((((.((((.....))))..(((((((........))))))).))))))).)))))))))))....-...-....... ( -26.10)
>DroSec_CAF1 32974 105 + 1
-------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGACG--GCAAAAAGUGAAUGUCACUUGCAAAUCAAAAUCGCGUUUUUU
-------------...((.((((..((((((((.((.(((..((((.(((.......)))..(((((((((...))--)))))))))))))).)).)))))))).....)))).)).... ( -23.70)
>DroEre_CAF1 32554 101 + 1
-------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGCCG--GCAAAAAGUGAAUGUCACUUGCAAAUCAAA-UAG-UUU--UU
-------------((.(((..((.((((..(((((.((((......)))).)))).......(((((((((...))--))))))))..)))))).)))))........-...-...--.. ( -23.20)
>DroAna_CAF1 35070 102 + 1
-------------GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGGUUUGAUUAAAUUUUUGUCGCGCCG--CAGAAAAGUGAAUGUCAUUUGCAAAUCAAACUCG-GUU--UU
-------------(((.((......(((((((((((.(((..((((.((.(((.((((.........)))).))).--)).....))))))).)))))))))))....)).)-)).--.. ( -25.70)
>DroPer_CAF1 30112 118 + 1
CUCCAAGGCCUUGCCCAGGGCAAACAUUUGCAAAUGUCAUAAUUACAUGAUAUUUGAUUAAAUUUUUGUCGAGCCACACAGAAAAGUGAAUGUCAUUUGCAAAUCAAA-CAA-CAUUAUU
.......(((((....)))))....(((((((((((.(((..((((.((((.....))))..(((((((........))))))).))))))).)))))))))))....-...-....... ( -26.10)
>consensus
_____________GCCAAGGCGAACAUUUGCAAAUGUCAUAAUUACAUGAGAUUUGAUUAAAUUUUUGUCGCGCCG__CAAAAAAGUGAAUGUCACUUGCAAAUCAAA_UAG_CUUU_UU
..................((((((.((((((((((.((((......)))).)))))..))))).)))))).............(((((.....)))))...................... (-17.44 = -16.83 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:28 2006