Locus 4171

Sequence ID 2R_DroMel_CAF1
Location 13,728,769 – 13,728,880
Length 111
Max. P 0.808929
window6708

overview

Window 8

Location 13,728,769 – 13,728,880
Length 111
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 95.24
Mean single sequence MFE -24.03
Consensus MFE -22.71
Energy contribution -22.47
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -1.22
Structure conservation index 0.95
SVM decision value 0.64
SVM RNA-class probability 0.808929
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13728769 111 - 20766785
CCUGUUUGCCGGCAAUUAUAGUCUAGGCC-ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGUGGAUGACCACCCAAUAU
(((((..((((((.......)))..))).-..(((((((((.((................))...)))))))))....)))))....(((..(((((....)))))..))). ( -25.69)
>DroSec_CAF1 30064 111 - 1
CCUGUUUGCCAGCAAUUAUAGUCUAGGCC-ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGUGGAUGACCACCCAAUAU
(((((..((((((.......).)).))).-..(((((((((.((................))...)))))))))....)))))....(((..(((((....)))))..))). ( -24.49)
>DroSim_CAF1 32604 111 - 1
CCUGUUUGCCAGCAAUUAUAGUCUAGGCC-ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGAGGAUGACCACCCAAUAU
.......((((((.......).)).))).-..(((((((((.((................))...)))))))))..((((.(((..(((((.....)))))...))).)))) ( -20.39)
>DroEre_CAF1 29793 110 - 1
CCU-UAUGCCGGCAAUUAUAGUCCAGGCC-UCUGAUUAGUAUGUUCUUAUCCUUCCACUUACUAUUACCAAUCAUUAUAUAGGGAUUUAUCUGGUGGAUGGCCACCCAAUAU
(((-(((((((((.......).)).))).-..(((((.(((.((................))...))).)))))....))))))...(((..(((((....)))))..))). ( -20.69)
>DroYak_CAF1 32158 112 - 1
CCUAUAUGCCGGCAAUUAUAGUCUAGGCCCACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUGUAGGGAUUUAUCUGGUGGAUGGCCACCCAAUAU
(((((((((((((.......)))..)))....(((((((((.((................))...)))))))))..)))))))....(((..(((((....)))))..))). ( -28.89)
>consensus
CCUGUUUGCCGGCAAUUAUAGUCUAGGCC_ACUGAUUGGUAUGUUCUUAUCCUUCCACUUACUAUUACCAGUCAUUAUAUAGGGAUUUAUCUGGUGGAUGACCACCCAAUAU
(((((..((((((.......).)).)))....(((((((((.((................))...)))))))))....)))))....(((..(((((....)))))..))). (-22.71 = -22.47 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:27 2006